PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1LXX
Theor. Model
Info
Theoretical Model (50 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
THEORETICAL MODEL OF THE CATALYTIC DOMAIN OF 3',5'-CYCLIC PHOSPHODIESTERASE 8A
Authors
:
S. Sunitatajne, S. Ramadevi
Date
:
06 Jun 02 (Deposition) - 26 Jun 02 (Release) - 20 Nov 02 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Sunitatajne, S. Ramadevi
Theoretical Model Of The Catalytic Domain Of 3', 5'-Cyclic Phosphodiesterase 8A
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PDEASE_I (A:109-120)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDEASE_I
PS00126
3'5'-cyclic nucleotide phosphodiesterases signature.
PDE8A_HUMAN
596-607
1
A:109-120
[
close PROSITE info
]
Exons
(7, 7)
Info
All Exons
Exon 1.18 (A:1-25)
Exon 1.19 (A:25-91)
Exon 1.20 (A:92-164)
Exon 1.21 (A:164-208)
Exon 1.22 (A:209-264)
Exon 1.23 (A:265-308)
Exon 1.24b (A:308-334)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.17/1.18
2: Boundary 1.18/1.19
3: Boundary 1.19/1.20
4: Boundary 1.20/1.21
5: Boundary 1.21/1.22
6: Boundary 1.22/1.23
7: Boundary 1.23/1.24b
8: Boundary 1.24b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000394553
2a
ENSE00001655579
chr15:
85525205-85525579
375
PDE8A_HUMAN
1-62
62
0
-
-
1.3
ENST00000394553
3
ENSE00001764359
chr15:
85607601-85607657
57
PDE8A_HUMAN
63-81
19
0
-
-
1.4
ENST00000394553
4
ENSE00001636622
chr15:
85610245-85610435
191
PDE8A_HUMAN
82-145
64
0
-
-
1.5
ENST00000394553
5
ENSE00001618381
chr15:
85619093-85619149
57
PDE8A_HUMAN
145-164
20
0
-
-
1.6
ENST00000394553
6
ENSE00001684152
chr15:
85619964-85620018
55
PDE8A_HUMAN
164-182
19
0
-
-
1.7
ENST00000394553
7
ENSE00001755447
chr15:
85626787-85626875
89
PDE8A_HUMAN
183-212
30
0
-
-
1.8
ENST00000394553
8
ENSE00001695435
chr15:
85632569-85632647
79
PDE8A_HUMAN
212-238
27
0
-
-
1.10
ENST00000394553
10
ENSE00001726628
chr15:
85634275-85634412
138
PDE8A_HUMAN
239-284
46
0
-
-
1.11
ENST00000394553
11
ENSE00001601720
chr15:
85641179-85641267
89
PDE8A_HUMAN
285-314
30
0
-
-
1.12
ENST00000394553
12
ENSE00001104439
chr15:
85643246-85643297
52
PDE8A_HUMAN
314-331
18
0
-
-
1.13
ENST00000394553
13
ENSE00001104423
chr15:
85643387-85643429
43
PDE8A_HUMAN
332-346
15
0
-
-
1.14
ENST00000394553
14
ENSE00001104415
chr15:
85652284-85652361
78
PDE8A_HUMAN
346-372
27
0
-
-
1.15
ENST00000394553
15
ENSE00001104468
chr15:
85656608-85656678
71
PDE8A_HUMAN
372-395
24
0
-
-
1.16
ENST00000394553
16
ENSE00001104402
chr15:
85657104-85657268
165
PDE8A_HUMAN
396-450
55
0
-
-
1.17
ENST00000394553
17
ENSE00001104405
chr15:
85658670-85658718
49
PDE8A_HUMAN
451-467
17
0
-
-
1.18
ENST00000394553
18
ENSE00001225334
chr15:
85659215-85659350
136
PDE8A_HUMAN
467-512
46
1
A:1-25
25
1.19
ENST00000394553
19
ENSE00001104432
chr15:
85660872-85661070
199
PDE8A_HUMAN
512-578
67
1
A:25-91
67
1.20
ENST00000394553
20
ENSE00001104459
chr15:
85664028-85664245
218
PDE8A_HUMAN
579-651
73
1
A:92-164
73
1.21
ENST00000394553
21
ENSE00001104456
chr15:
85666292-85666424
133
PDE8A_HUMAN
651-695
45
1
A:164-208
45
1.22
ENST00000394553
22
ENSE00001104435
chr15:
85669438-85669605
168
PDE8A_HUMAN
696-751
56
1
A:209-264
56
1.23
ENST00000394553
23
ENSE00001104452
chr15:
85679765-85679894
130
PDE8A_HUMAN
752-795
44
1
A:265-308
44
1.24b
ENST00000394553
24b
ENSE00001370034
chr15:
85681028-85682367
1340
PDE8A_HUMAN
795-829
35
1
A:308-334
27
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Theoretical Model (50 KB)
Header - Theoretical Model
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1LXX
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help