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Getting 'Exon' information from database.
1LUJ
Asym. Unit
Info
Asym.Unit (90 KB)
Biol.Unit 1 (86 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE BETA-CATENIN/ICAT COMPLEX
Authors
:
T. A. Graham, W. K. Clements, D. Kimelman, W. Xu
Date
:
22 May 02 (Deposition) - 16 Oct 02 (Release) - 16 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Beta-Catenin, Icat, Wnt Pathway, Inhibitor, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. A. Graham, W. K. Clements, D. Kimelman, W. Xu
The Crystal Structure Of The Beta-Catenin/Icat Complex Reveals The Inhibitory Mechanism Of Icat.
Mol. Cell V. 10 563 2002
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_072282 (L388P, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_072282
L
388
P
CTNB1_HUMAN
Disease (MRD19)
---
A
L
388
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 9)
Info
All PROSITE Patterns/Profiles
1: ARM_REPEAT (A:193-236|A:151-191|A:235-277|A:27...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARM_REPEAT
PS50176
Armadillo/plakoglobin ARM repeat profile.
CTNB1_HUMAN
193-236
151-191
235-277
277-319
319-362
400-442
442-484
489-532
594-636
9
A:193-236
A:151-191
A:235-277
A:277-319
A:319-362
A:400-442
A:442-484
A:489-532
A:594-636
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Exons
(10, 10)
Info
All Exons
Exon 1.10d (A:150-165)
Exon 1.11b (A:166-245)
Exon 1.12 (A:245-312)
Exon 1.13 (A:313-361)
Exon 1.14 (A:361-395)
Exon 1.15 (A:396-508)
Exon 1.16a (A:509-549)
Exon 1.17b (A:563-601)
Exon 1.18a (A:602-652)
Exon 1.18d (A:652-663)
View:
Select:
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All Exon Boundaries
01: Boundary 1.9e/1.10d
02: Boundary 1.10d/1.11b
03: Boundary 1.11b/1.12
04: Boundary 1.12/1.13
05: Boundary 1.13/1.14
06: Boundary 1.14/1.15
07: Boundary 1.15/1.16a
08: Boundary 1.16a/1.17b
09: Boundary 1.17b/1.18a
10: Boundary 1.18a/1.18d
11: Boundary 1.18d/1.19
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4e
ENST00000396185
4e
ENSE00001933873
chr3:
41240996-41241161
166
CTNB1_HUMAN
-
0
0
-
-
1.7
ENST00000396185
7
ENSE00002142861
chr3:
41265512-41265572
61
CTNB1_HUMAN
1-5
5
0
-
-
1.9e
ENST00000396185
9e
ENSE00001697426
chr3:
41266017-41266244
228
CTNB1_HUMAN
5-81
77
0
-
-
1.10d
ENST00000396185
10d
ENSE00001748344
chr3:
41266445-41266698
254
CTNB1_HUMAN
81-165
85
1
A:150-165
16
1.11b
ENST00000396185
11b
ENSE00001692569
chr3:
41266825-41267063
239
CTNB1_HUMAN
166-245
80
1
A:166-245
80
1.12
ENST00000396185
12
ENSE00001643204
chr3:
41267151-41267352
202
CTNB1_HUMAN
245-312
68
1
A:245-312
68
1.13
ENST00000396185
13
ENSE00001767208
chr3:
41268699-41268843
145
CTNB1_HUMAN
313-361
49
1
A:313-361
49
1.14
ENST00000396185
14
ENSE00001649367
chr3:
41274832-41274935
104
CTNB1_HUMAN
361-395
35
1
A:361-395
35
1.15
ENST00000396185
15
ENSE00001718373
chr3:
41275020-41275358
339
CTNB1_HUMAN
396-508
113
1
A:396-508
113
1.16a
ENST00000396185
16a
ENSE00001592339
chr3:
41275630-41275788
159
CTNB1_HUMAN
509-561
53
1
A:509-549
41
1.17b
ENST00000396185
17b
ENSE00001707050
chr3:
41277215-41277334
120
CTNB1_HUMAN
562-601
40
1
A:563-601
39
1.18a
ENST00000396185
18a
ENSE00002175036
chr3:
41277840-41277990
151
CTNB1_HUMAN
602-652
51
1
A:602-652
51
1.18d
ENST00000396185
18d
ENSE00001782706
chr3:
41278079-41278200
122
CTNB1_HUMAN
652-692
41
1
A:652-663
12
1.19
ENST00000396185
19
ENSE00001805633
chr3:
41279507-41279567
61
CTNB1_HUMAN
693-713
21
0
-
-
1.20c
ENST00000396185
20c
ENSE00001524181
chr3:
41280625-41280845
221
CTNB1_HUMAN
713-781
69
0
-
-
1.20g
ENST00000396185
20g
ENSE00001524178
chr3:
41281151-41281934
784
CTNB1_HUMAN
-
0
0
-
-
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1luja_ (A:)
2a: SCOP_d1lujb_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ARM repeat
(317)
Family
:
Armadillo repeat
(77)
Protein domain
:
beta-Catenin
(21)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d1luja_
A:
Fold
:
beta-catenin-interacting protein ICAT
(3)
Superfamily
:
beta-catenin-interacting protein ICAT
(3)
Family
:
beta-catenin-interacting protein ICAT
(3)
Protein domain
:
beta-catenin-interacting protein ICAT
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d1lujb_
B:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1lujA00 (A:150-663)
2a: CATH_1lujB01 (B:5-57)
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)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Leucine-rich Repeat Variant
(77)
Homologous Superfamily
:
Leucine-rich Repeat Variant
(75)
Human (Homo sapiens)
(30)
1a
1lujA00
A:150-663
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
beta-catenin-interacting protein ICAT, Chain B, ?????domain1
(3)
Human (Homo sapiens)
(2)
2a
1lujB01
B:5-57
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Pfam Domains
(2, 5)
Info
all PFAM domains
1a: PFAM_Arm_1lujA01 (A:583-623)
1b: PFAM_Arm_1lujA02 (A:583-623)
1c: PFAM_Arm_1lujA03 (A:583-623)
1d: PFAM_Arm_1lujA04 (A:583-623)
2a: PFAM_ICAT_1lujB01 (B:5-75)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
TPR
(230)
Family
:
Arm
(24)
Homo sapiens (Human)
(19)
1a
Arm-1lujA01
A:583-623
1b
Arm-1lujA02
A:583-623
1c
Arm-1lujA03
A:583-623
1d
Arm-1lujA04
A:583-623
Clan
:
no clan defined [family: ICAT]
(3)
Family
:
ICAT
(3)
Homo sapiens (Human)
(3)
2a
ICAT-1lujB01
B:5-75
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