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1LT6
Asym. Unit
Info
Asym.Unit (182 KB)
Biol.Unit 1 (90 KB)
Biol.Unit 2 (91 KB)
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(1)
Title
:
HEAT-LABILE ENTEROTOXIN B-PENTAMER COMPLEXED WITH METANITROPHENYLGALACTOSIDE
Authors
:
E. A. Merritt, W. G. J. Hol
Date
:
01 Oct 97 (Deposition) - 03 Dec 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : D,E,F,G,H,L,M,N,O,P
Biol. Unit 1: D,E,F,G,H (1x)
Biol. Unit 2: L,M,N,O,P (1x)
Keywords
:
Enterotoxin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. A. Merritt, S. Sarfaty, I. K. Feil, W. G. Hol
Structural Foundation For The Design Of Receptor Antagonists Targeting Escherichia Coli Heat-Labile Enterotoxin.
Structure V. 5 1485 1997
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 10)
Info
All Hetero Components
1a: METANITROPHENYL-ALPHA-D-GALACTOSID... (GAAa)
1b: METANITROPHENYL-ALPHA-D-GALACTOSID... (GAAb)
1c: METANITROPHENYL-ALPHA-D-GALACTOSID... (GAAc)
1d: METANITROPHENYL-ALPHA-D-GALACTOSID... (GAAd)
1e: METANITROPHENYL-ALPHA-D-GALACTOSID... (GAAe)
1f: METANITROPHENYL-ALPHA-D-GALACTOSID... (GAAf)
1g: METANITROPHENYL-ALPHA-D-GALACTOSID... (GAAg)
1h: METANITROPHENYL-ALPHA-D-GALACTOSID... (GAAh)
1i: METANITROPHENYL-ALPHA-D-GALACTOSID... (GAAi)
1j: METANITROPHENYL-ALPHA-D-GALACTOSID... (GAAj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GAA
10
Ligand/Ion
METANITROPHENYL-ALPHA-D-GALACTOSIDE
[
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]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR D:12 , GLU D:51 , GLN D:56 , HIS D:57 , GLN D:61 , TRP D:88 , ASN D:90 , LYS D:91 , HOH D:124 , HOH D:125 , GLY E:33
BINDING SITE FOR RESIDUE GAA D 104
02
AC2
SOFTWARE
TYR E:12 , GLU E:51 , HIS E:57 , GLN E:61 , TRP E:88 , ASN E:90 , LYS E:91 , HOH E:126 , GLY F:33
BINDING SITE FOR RESIDUE GAA E 104
03
AC3
SOFTWARE
TYR F:12 , GLU F:51 , GLN F:56 , HIS F:57 , GLN F:61 , TRP F:88 , ASN F:90 , LYS F:91 , HOH F:113 , HOH F:128 , GLY G:33
BINDING SITE FOR RESIDUE GAA F 104
04
AC4
SOFTWARE
ARG G:13 , GLU G:51 , GLN G:56 , HIS G:57 , GLN G:61 , TRP G:88 , ASN G:90 , LYS G:91 , HOH G:124 , GLY H:33
BINDING SITE FOR RESIDUE GAA G 104
05
AC5
SOFTWARE
GLY D:33 , TYR H:12 , GLU H:51 , GLN H:56 , HIS H:57 , GLN H:61 , TRP H:88 , ASN H:90 , LYS H:91
BINDING SITE FOR RESIDUE GAA H 104
06
AC6
SOFTWARE
GLU L:51 , GLN L:56 , HIS L:57 , GLN L:61 , TRP L:88 , ASN L:90 , LYS L:91 , HOH L:119 , GLY M:33
BINDING SITE FOR RESIDUE GAA L 104
07
AC7
SOFTWARE
TYR M:12 , GLU M:51 , GLN M:56 , HIS M:57 , GLN M:61 , TRP M:88 , ASN M:90 , LYS M:91 , HOH M:134 , GLY N:33
BINDING SITE FOR RESIDUE GAA M 104
08
AC8
SOFTWARE
TYR N:12 , GLU N:51 , GLN N:56 , HIS N:57 , GLN N:61 , TRP N:88 , ASN N:90 , LYS N:91 , HOH N:106 , HOH N:128 , GLY O:33
BINDING SITE FOR RESIDUE GAA N 104
09
AC9
SOFTWARE
TYR O:12 , GLU O:51 , GLN O:56 , HIS O:57 , GLN O:61 , TRP O:88 , ASN O:90 , LYS O:91 , HOH O:106 , ALA P:32 , GLY P:33
BINDING SITE FOR RESIDUE GAA O 104
10
BC1
SOFTWARE
GLY L:33 , LYS L:34 , TYR P:12 , GLU P:51 , GLN P:56 , HIS P:57 , GLN P:61 , TRP P:88 , ASN P:90 , LYS P:91 , HOH P:125
BINDING SITE FOR RESIDUE GAA P 104
[
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SAPs(SNPs)/Variants
(1, 10)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_ELBP_ECOLX_001 (T75A, chain D/E/F/G/H/L/M/N/O/P, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_ELBP_ECOLX_001
*
T
96
A
ELBP_ECOLX
---
---
D/E/F/G/H/L/M/N/O/P
T
75
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 10)
Info
All SCOP Domains
1a: SCOP_d1lt6d_ (D:)
1b: SCOP_d1lt6e_ (E:)
1c: SCOP_d1lt6f_ (F:)
1d: SCOP_d1lt6g_ (G:)
1e: SCOP_d1lt6h_ (H:)
1f: SCOP_d1lt6l_ (L:)
1g: SCOP_d1lt6m_ (M:)
1h: SCOP_d1lt6n_ (N:)
1i: SCOP_d1lt6o_ (O:)
1j: SCOP_d1lt6p_ (P:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Bacterial enterotoxins
(188)
Family
:
Bacterial AB5 toxins, B-subunits
(85)
Protein domain
:
Heat-labile toxin
(24)
Escherichia coli, type IB [TaxId: 562]
(21)
1a
d1lt6d_
D:
1b
d1lt6e_
E:
1c
d1lt6f_
F:
1d
d1lt6g_
G:
1e
d1lt6h_
H:
1f
d1lt6l_
L:
1g
d1lt6m_
M:
1h
d1lt6n_
N:
1i
d1lt6o_
O:
1j
d1lt6p_
P:
[
close SCOP info
]
CATH Domains
(1, 10)
Info
all CATH domains
1a: CATH_1lt6D00 (D:1-103)
1b: CATH_1lt6E00 (E:1-103)
1c: CATH_1lt6F00 (F:1-103)
1d: CATH_1lt6G00 (G:1-103)
1e: CATH_1lt6H00 (H:1-103)
1f: CATH_1lt6L00 (L:1-103)
1g: CATH_1lt6M00 (M:1-103)
1h: CATH_1lt6N00 (N:1-103)
1i: CATH_1lt6O00 (O:1-103)
1j: CATH_1lt6P00 (P:1-103)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.110, no name defined]
(136)
Escherichia coli. Organism_taxid: 562. Strain: porcine.
(7)
1a
1lt6D00
D:1-103
1b
1lt6E00
E:1-103
1c
1lt6F00
F:1-103
1d
1lt6G00
G:1-103
1e
1lt6H00
H:1-103
1f
1lt6L00
L:1-103
1g
1lt6M00
M:1-103
1h
1lt6N00
N:1-103
1i
1lt6O00
O:1-103
1j
1lt6P00
P:1-103
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Chain D
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Chain F
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Chain H
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Chain N
Chain O
Chain P
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (182 KB)
Header - Asym.Unit
Biol.Unit 1 (90 KB)
Header - Biol.Unit 1
Biol.Unit 2 (91 KB)
Header - Biol.Unit 2
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