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Getting 'Exon' information from database.
1LSL
Asym. Unit
Info
Asym.Unit (26 KB)
Biol.Unit 1 (22 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE THROMBOSPONDIN-1 TYPE 1 REPEATS
Authors
:
K. Tan, M. Duquette, J. Liu, Y. Dong, R. Zhang, A. Joachimiak, J. Lawler, J. -H. Wang
Date
:
17 May 02 (Deposition) - 18 Dec 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Tsp-1, Tsr, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Tan, M. Duquette, J. H. Liu, Y. Dong, R. Zhang, A. Joachimiak, J. Lawler, J. H. Wang
Crystal Structure Of The Tsp-1 Type 1 Repeats: A Novel Layered Fold And Its Biological Implication.
J. Cell Biol. V. 159 373 2002
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 2)
Info
All Hetero Components
1a: ALPHA-L-FUCOSE (FUCa)
2a: BETA-L-FUCOSE (FULa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
2
FUL
1
Ligand/Ion
BETA-L-FUCOSE
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:416 , THR A:432 , CYS A:433 , PRO A:472
BINDING SITE FOR RESIDUE FUL A 1432
2
AC2
SOFTWARE
THR A:489 , HOH A:1092 , HOH A:1150
BINDING SITE FOR RESIDUE FUC A 1489
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_028938 (T505A, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_028938
T
523
A
TSP1_HUMAN
Polymorphism
2292305
A
T
505
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: TSP1 (-|A:417-472|A:474-528)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TSP1
PS50092
Thrombospondin type-1 (TSP1) repeat profile.
TSP1_HUMAN
379-429
435-490
492-547
2
-
A:417-472
A:474-528
[
close PROSITE info
]
Exons
(2, 2)
Info
All Exons
Exon 1.9a (A:416-473)
Exon 1.10b (A:473-528)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.8b/1.9a
2: Boundary 1.9a/1.10b
3: Boundary 1.10b/1.11c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000260356
1a
ENSE00001948740
chr15:
39873127-39873429
303
TSP1_HUMAN
-
0
0
-
-
1.2b
ENST00000260356
2b
ENSE00002162162
chr15:
39874030-39874125
96
TSP1_HUMAN
1-23
23
0
-
-
1.3b
ENST00000260356
3b
ENSE00001792284
chr15:
39874394-39874953
560
TSP1_HUMAN
23-209
187
0
-
-
1.4
ENST00000260356
4
ENSE00001758707
chr15:
39875818-39875893
76
TSP1_HUMAN
210-235
26
0
-
-
1.5
ENST00000260356
5
ENSE00001725099
chr15:
39876189-39876388
200
TSP1_HUMAN
235-301
67
0
-
-
1.6
ENST00000260356
6
ENSE00001706898
chr15:
39876501-39876623
123
TSP1_HUMAN
302-342
41
0
-
-
1.7
ENST00000260356
7
ENSE00001674053
chr15:
39877671-39877764
94
TSP1_HUMAN
343-374
32
0
-
-
1.8b
ENST00000260356
8b
ENSE00001738791
chr15:
39879548-39879721
174
TSP1_HUMAN
374-432
59
0
-
-
1.9a
ENST00000260356
9a
ENSE00001608072
chr15:
39880243-39880419
177
TSP1_HUMAN
432-491
60
1
A:416-473
58
1.10b
ENST00000260356
10b
ENSE00001783863
chr15:
39880727-39880900
174
TSP1_HUMAN
491-549
59
1
A:473-528
56
1.11c
ENST00000260356
11c
ENSE00001710663
chr15:
39881160-39881287
128
TSP1_HUMAN
549-591
43
0
-
-
1.12
ENST00000260356
12
ENSE00001794374
chr15:
39881403-39881555
153
TSP1_HUMAN
592-642
51
0
-
-
1.13c
ENST00000260356
13c
ENSE00000883769
chr15:
39882006-39882224
219
TSP1_HUMAN
643-715
73
0
-
-
1.14
ENST00000260356
14
ENSE00000883770
chr15:
39882717-39882824
108
TSP1_HUMAN
716-751
36
0
-
-
1.15
ENST00000260356
15
ENSE00000883771
chr15:
39883392-39883551
160
TSP1_HUMAN
752-805
54
0
-
-
1.16
ENST00000260356
16
ENSE00000883772
chr15:
39883706-39883824
119
TSP1_HUMAN
805-844
40
0
-
-
1.17
ENST00000260356
17
ENSE00000883773
chr15:
39884769-39885003
235
TSP1_HUMAN
845-923
79
0
-
-
1.18a
ENST00000260356
18a
ENSE00000883774
chr15:
39885201-39885428
228
TSP1_HUMAN
923-999
77
0
-
-
1.19a
ENST00000260356
19a
ENSE00000883775
chr15:
39885598-39885869
272
TSP1_HUMAN
999-1089
91
0
-
-
1.19c
ENST00000260356
19c
ENSE00000883776
chr15:
39886300-39886397
98
TSP1_HUMAN
1090-1122
33
0
-
-
1.20
ENST00000260356
20
ENSE00000883777
chr15:
39886502-39886641
140
TSP1_HUMAN
1122-1169
48
0
-
-
1.21b
ENST00000260356
21b
ENSE00000930951
chr15:
39887563-39891119
3557
TSP1_HUMAN
1169-1170
2
0
-
-
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1lsla1 (A:416-469)
1b: SCOP_d1lsla2 (A:470-528)
View:
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Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
TSP-1 type 1 repeat
(3)
Superfamily
:
TSP-1 type 1 repeat
(3)
Family
:
TSP-1 type 1 repeat
(2)
Protein domain
:
Thrombospondin-1 (TSP-1)
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1lsla1
A:416-469
1b
d1lsla2
A:470-528
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1lslA01 (A:416-471)
1b: CATH_1lslA02 (A:472-528)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Single Sheet
(341)
Topology
:
TSP-1 type 1 repeat
(2)
Homologous Superfamily
:
TSP-1 type 1 repeat
(2)
Human (Homo sapiens)
(1)
1a
1lslA01
A:416-471
1b
1lslA02
A:472-528
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_TSP_1_1lslA01 (A:478-528)
1b: PFAM_TSP_1_1lslA02 (A:478-528)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: TSP_1]
(3)
Family
:
TSP_1
(3)
Homo sapiens (Human)
(2)
1a
TSP_1-1lslA01
A:478-528
1b
TSP_1-1lslA02
A:478-528
[
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]
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Asymmetric Unit 1
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