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1LR5
Biol. Unit 1
Info
Asym.Unit (131 KB)
Biol.Unit 1 (65 KB)
Biol.Unit 2 (63 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AUXIN BINDING PROTEIN
Authors
:
E. J. Woo, J. Marshall, J. Bauley, J. -G. Chen, M. Venis, R. M. Napier, R. W. Pickersgill
Date
:
14 May 02 (Deposition) - 19 Jun 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Beta Jellyroll, Double Stranded Beta Helix, Germin-Like Protein, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. J. Woo, J. Marshall, J. Bauly, J. G. Chen, M. Venis, R. M. Napier, R. W. Pickersgill
Crystal Structure Of Auxin-Binding Protein 1 In Complex Wit Auxin.
Embo J. V. 21 2877 2002
[
close entry info
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
MAN
6
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: BC1 (SOFTWARE)
08: BC2 (SOFTWARE)
09: BC3 (SOFTWARE)
10: CC1 (SOFTWARE)
11: CC2 (SOFTWARE)
12: CC3 (SOFTWARE)
13: CC4 (SOFTWARE)
14: CC5 (SOFTWARE)
15: CC6 (SOFTWARE)
16: CC7 (SOFTWARE)
17: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:94 , ASN A:95 , NAG A:182 , HOH A:250 , HOH A:257 , ILE D:28 , GLN D:118 , HOH D:187 , HOH D:188 , HOH D:325
BINDING SITE FOR RESIDUE NAG A 181
02
AC2
SOFTWARE
NAG A:181 , BMA A:183 , GLN D:17 , SER D:26 , LEU D:45 , THR D:47 , GLN D:118 , HOH D:188 , HOH D:189
BINDING SITE FOR RESIDUE NAG A 182
03
AC3
SOFTWARE
NAG A:182 , MAN A:184 , HOH A:229 , HOH A:304 , HOH A:387 , THR D:47 , ASP D:116
BINDING SITE FOR RESIDUE BMA A 183
04
AC4
SOFTWARE
BMA A:183 , MAN A:185 , MAN A:186 , HOH A:226 , HOH A:261 , HOH A:270 , GLY D:24 , LEU D:25
BINDING SITE FOR RESIDUE MAN A 184
05
AC5
SOFTWARE
MAN A:184 , HOH A:229 , HOH A:259 , HOH A:328 , HOH A:354 , GLN D:17 , SER D:18 , SER D:19 , SER D:26 , HOH D:336
BINDING SITE FOR RESIDUE MAN A 185
06
AC6
SOFTWARE
MAN A:184 , HOH A:276 , LYS B:71 , PHE B:93 , HOH B:234 , HOH B:314 , GLU D:23
BINDING SITE FOR RESIDUE MAN A 186
07
BC1
SOFTWARE
GLU A:113 , BMA B:183 , MAN B:185 , MAN B:186 , HOH B:247 , HOH B:271 , GLY C:24 , LEU C:25 , SER C:49
BINDING SITE FOR RESIDUE MAN B 184
08
BC2
SOFTWARE
HIS A:114 , MAN B:184 , HOH B:257 , HOH B:324 , HOH B:388 , GLN C:17 , SER C:18 , SER C:19 , SER C:26
BINDING SITE FOR RESIDUE MAN B 185
09
BC3
SOFTWARE
GLU A:113 , MAN B:184 , GLU C:23 , SER C:49
BINDING SITE FOR RESIDUE MAN B 186
10
CC1
SOFTWARE
SER A:13 , ILE A:28 , GLN A:118 , HOH A:392 , ASN D:95 , NAG D:182 , HOH D:244 , HOH D:262 , HOH D:283
BINDING SITE FOR RESIDUE NAG D 181
11
CC2
SOFTWARE
GLN A:17 , SER A:26 , ILE A:28 , LEU A:45 , THR A:47 , GLN A:118 , HOH A:392 , NAG D:181 , BMA D:183
BINDING SITE FOR RESIDUE NAG D 182
12
CC3
SOFTWARE
THR A:47 , ASP A:116 , HOH A:398 , NAG D:182 , MAN D:184
BINDING SITE FOR RESIDUE BMA D 183
13
CC4
SOFTWARE
SER A:19 , GLY A:24 , LEU A:25 , BMA D:183 , MAN D:185 , MAN D:186 , HOH D:305 , HOH D:331
BINDING SITE FOR RESIDUE MAN D 184
14
CC5
SOFTWARE
GLN A:17 , SER A:18 , SER A:19 , HOH A:340 , MAN D:184 , HOH D:269
BINDING SITE FOR RESIDUE MAN D 185
15
CC6
SOFTWARE
GLU A:23 , ALA D:142 , MAN D:184 , HOH D:194 , HOH D:346
BINDING SITE FOR RESIDUE MAN D 186
16
CC7
SOFTWARE
HIS A:57 , HIS A:59 , GLU A:63 , HIS A:106 , HOH A:282
BINDING SITE FOR RESIDUE ZN A 180
17
DC1
SOFTWARE
HIS D:57 , HIS D:59 , GLU D:63 , HIS D:106 , HOH D:254
BINDING SITE FOR RESIDUE ZN D 180
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_ABP1_MAIZE_002 (N103S, chain A/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_ABP1_MAIZE_002
*
N
141
S
ABP1_MAIZE
---
---
A/D
N
103
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ER_TARGET (A:160-160,D:160-160)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ER_TARGET
PS00014
Endoplasmic reticulum targeting sequence.
ABP1_MAIZE
198-201
2
A:160-160
-
D:160-160
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1lr5a_ (A:)
1b: SCOP_d1lr5b_ (B:)
1c: SCOP_d1lr5c_ (C:)
1d: SCOP_d1lr5d_ (D:)
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(
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(
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
RmlC-like cupins
(220)
Family
:
Germin/Seed storage 7S protein
(34)
Protein domain
:
Auxin binding protein
(2)
Maize (Zea mays) [TaxId: 4577]
(2)
1a
d1lr5a_
A:
1b
d1lr5b_
B:
1c
d1lr5c_
C:
1d
d1lr5d_
D:
[
close SCOP info
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1lr5B00 (B:1-159)
1b: CATH_1lr5A00 (A:1-160)
1c: CATH_1lr5C00 (C:1-160)
1d: CATH_1lr5D00 (D:1-160)
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Classes
(
)
(
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Architectures
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Jelly Rolls
(177)
Zea mays. Organism_taxid: 4577.
(1)
1a
1lr5B00
B:1-159
1b
1lr5A00
A:1-160
1c
1lr5C00
C:1-160
1d
1lr5D00
D:1-160
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Auxin_BP_1lr5D01 (D:1-160)
1b: PFAM_Auxin_BP_1lr5D02 (D:1-160)
1c: PFAM_Auxin_BP_1lr5D03 (D:1-160)
1d: PFAM_Auxin_BP_1lr5D04 (D:1-160)
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Clans
(
)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
Cupin
(179)
Family
:
Auxin_BP
(2)
Zea mays (Maize)
(2)
1a
Auxin_BP-1lr5D01
D:1-160
1b
Auxin_BP-1lr5D02
D:1-160
1c
Auxin_BP-1lr5D03
D:1-160
1d
Auxin_BP-1lr5D04
D:1-160
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]
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Asymmetric Unit 1
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