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1LPG
Biol. Unit 1
Info
Asym.Unit (59 KB)
Biol.Unit 1 (12 KB)
Biol.Unit 2 (45 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FXA IN COMPLEX WITH 79.
Authors
:
H. A. Schreuder, V. Brachvogel, A. Liesum
Date
:
08 May 02 (Deposition) - 08 May 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Protein Inhibitor Complex, Blood Coagulation Factor, Serine Proteinase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Matter, E. Defossa, U. Heinelt, P. M. Blohm, D. Schneider, A. Mueller, S. Herok, H. Schreuder, A. Liesum, B. Brachvogel, P. Loenze, A. Walser, F. Al-Obeidi, P. Wildgoose
Design And Quantitative Structure-Activity Relationship Of 3-Amidinobenzyl-1H-Indole-2-Carboxamides As Potent, Nonchiral, And Selective Inhibitors Of Blood Coagulation Factor Xa.
J. Med. Chem. V. 45 2749 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: [4-({[5-BENZYLOXY-1-(3-CARBAMIMIDO... (IMAa)
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_065434 (E14K, chain A, )
2: VAR_065435 (C21Y, chain A, )
3: VAR_065436 (C23Y, chain A, )
4: VAR_020176 (A24T, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_065434
E
142
K
FA10_HUMAN
Unclassified
61753266
A
E
14
K
02
UniProt
VAR_065435
C
149
Y
FA10_HUMAN
Disease (FA10D)
---
A
C
21
Y
03
UniProt
VAR_065436
C
151
Y
FA10_HUMAN
Disease (FA10D)
---
A
C
23
Y
04
UniProt
VAR_020176
A
152
T
FA10_HUMAN
Polymorphism
3211772
A
A
24
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: EGF_2 (A:21-36)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_2
PS01186
EGF-like domain signature 2.
FA10_HUMAN
110-121
149-164
1
-
A:21-36
2
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
FA10_HUMAN
235-467
0
-
3
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
FA10_HUMAN
272-277
0
-
4
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
FA10_HUMAN
413-424
0
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1lpgb_ (B:)
2a: SCOP_d1lpga_ (A:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
Coagulation factor Xa, protease domain
(48)
Human (Homo sapiens) [TaxId: 9606]
(47)
1a
d1lpgb_
B:
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
EGF-type module
(304)
Protein domain
:
Factor X, N-terminal module
(81)
Human (Homo sapiens) [TaxId: 9606]
(76)
2a
d1lpga_
A:
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1lpgB01 (B:16-27,B:121-232)
1b: CATH_1lpgB02 (B:28-120,B:233-244)
2a: CATH_1lpgA00 (A:1A-50)
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Topologies
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)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Human (Homo sapiens)
(615)
1a
1lpgB01
B:16-27,B:121-232
1b
1lpgB02
B:28-120,B:233-244
Architecture
:
Ribbon
(789)
Topology
:
Laminin
(270)
Homologous Superfamily
:
Laminin
(263)
Human (Homo sapiens)
(195)
2a
1lpgA00
A:1A-50
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Trypsin_1lpgB01 (B:16-238)
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Clans
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)
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)
(
)
Clan
:
Peptidase_PA
(797)
Family
:
Trypsin
(679)
Homo sapiens (Human)
(339)
1a
Trypsin-1lpgB01
B:16-238
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Chain A
Asymmetric Unit 1
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Asym.Unit (59 KB)
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