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1LPF
Asym. Unit
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Asym.Unit (148 KB)
Biol.Unit 1 (142 KB)
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(1)
Title
:
THREE-DIMENSIONAL STRUCTURE OF LIPOAMIDE DEHYDROGENASE FROM PSEUDOMONAS FLUORESCENS AT 2.8 ANGSTROMS RESOLUTION. ANALYSIS OF REDOX AND THERMOSTABILITY PROPERTIES
Authors
:
A. Mattevi, W. Hol
Date
:
26 Oct 92 (Deposition) - 31 Jan 94 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Mattevi, G. Obmolova, K. H. Kalk, W. J. Van Berkel, W. G. Hol
Three-Dimensional Structure Of Lipoamide Dehydrogenase From Pseudomonas Fluorescens At 2. 8 A Resolution. Analysis Of Redox And Thermostability Properties.
J. Mol. Biol. V. 230 1200 1993
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
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No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:9 , GLY A:10 , GLY A:12 , PRO A:13 , GLY A:14 , GLU A:33 , LYS A:34 , TYR A:35 , GLY A:46 , THR A:47 , CYS A:48 , VAL A:51 , GLY A:52 , CYS A:53 , SER A:56 , LYS A:57 , GLY A:119 , GLY A:121 , ALA A:149 , SER A:150 , GLY A:151 , ILE A:191 , ARG A:278 , LEU A:285 , GLY A:317 , ASP A:318 , MET A:324 , LEU A:325 , ALA A:326 , HIS B:450 , PRO B:451
BINDING SITE FOR RESIDUE FAD A 480
2
AC2
SOFTWARE
HIS A:450 , PRO A:451 , ILE B:9 , GLY B:10 , GLY B:12 , PRO B:13 , GLY B:14 , GLU B:33 , LYS B:34 , GLY B:46 , THR B:47 , CYS B:48 , VAL B:51 , GLY B:52 , CYS B:53 , LYS B:57 , GLY B:119 , HIS B:120 , GLY B:121 , ALA B:149 , SER B:150 , GLY B:151 , SER B:152 , SER B:170 , ILE B:191 , ARG B:278 , LEU B:285 , GLY B:317 , ASP B:318 , MET B:324 , LEU B:325 , ALA B:326 , HIS B:327
BINDING SITE FOR RESIDUE FAD B 480
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
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1: PYRIDINE_REDOX_1 (A:45-55,B:45-55)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PYRIDINE_REDOX_1
PS00076
Pyridine nucleotide-disulphide oxidoreductases class-I active site.
DLDH_PSEFL
46-56
2
A:45-55
B:45-55
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1lpfa3 (A:349-472)
1b: SCOP_d1lpfb3 (B:349-472)
2a: SCOP_d1lpfa1 (A:1-158,A:278-348)
2b: SCOP_d1lpfa2 (A:159-277)
2c: SCOP_d1lpfb1 (B:1-158,B:278-348)
2d: SCOP_d1lpfb2 (B:159-277)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
CO dehydrogenase flavoprotein C-domain-like
(111)
Superfamily
:
FAD/NAD-linked reductases, dimerisation (C-terminal) domain
(76)
Family
:
FAD/NAD-linked reductases, dimerisation (C-terminal) domain
(76)
Protein domain
:
Dihydrolipoamide dehydrogenase
(10)
Pseudomonas fluorescens [TaxId: 294]
(1)
1a
d1lpfa3
A:349-472
1b
d1lpfb3
B:349-472
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD/NAD-linked reductases, N-terminal and central domains
(92)
Protein domain
:
Dihydrolipoamide dehydrogenase
(10)
Pseudomonas fluorescens [TaxId: 294]
(1)
2a
d1lpfa1
A:1-158,A:278-348
2b
d1lpfa2
A:159-277
2c
d1lpfb1
B:1-158,B:278-348
2d
d1lpfb2
B:159-277
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1lpfA03 (A:351-472)
1b: CATH_1lpfB03 (B:351-472)
2a: CATH_1lpfA01 (A:1-154,A:277-350)
2b: CATH_1lpfB01 (B:1-154,B:277-350)
2c: CATH_1lpfA02 (A:155-276)
2d: CATH_1lpfB02 (B:155-276)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Enolase-like; domain 1
(252)
Homologous Superfamily
:
[code=3.30.390.30, no name defined]
(99)
Pseudomonas fluorescens. Organism_taxid: 294
(1)
1a
1lpfA03
A:351-472
1b
1lpfB03
B:351-472
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Pseudomonas fluorescens. Organism_taxid: 294
(9)
2a
1lpfA01
A:1-154,A:277-350
2b
1lpfB01
B:1-154,B:277-350
2c
1lpfA02
A:155-276
2d
1lpfB02
B:155-276
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Pfam Domains
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Asymmetric Unit 1
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