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Asym. Unit
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Asym.Unit (112 KB)
Biol.Unit 1 (108 KB)
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(1)
Title
:
RABBIT RETICULOCYTE 15-LIPOXYGENASE
Authors
:
S. A. Gillmor, A. Villasenor, R. J. Fletterick, E. Sigal, M. F. Browner
Date
:
06 Oct 97 (Deposition) - 04 Nov 98 (Release) - 16 Dec 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Oxidoreductase, 15Lo_depot2
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. A. Gillmor, A. Villasenor, R. Fletterick, E. Sigal, M. F. Browner
The Structure Of Mammalian 15-Lipoxygenase Reveals Similarity To The Lipases And The Determinants Of Substrate Specificity.
Nat. Struct. Biol. V. 4 1003 1997
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: FE (II) ION (FE2a)
2a: (2E)-3-(2-OCT-1-YN-1-YLPHENYL)ACRY... (RS7a)
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No.
Name
Count
Type
Full Name
1
FE2
1
Ligand/Ion
FE (II) ION
2
RS7
1
Ligand/Ion
(2E)-3-(2-OCT-1-YN-1-YLPHENYL)ACRYLIC ACID
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: NUL (UNKNOWN)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:361 , HIS A:366 , HIS A:541 , HIS A:545 , ILE A:663
BINDING SITE FOR RESIDUE FE2 A 840
2
AC2
SOFTWARE
PHE A:353 , GLU A:357 , HIS A:361 , LEU A:362 , HIS A:366 , ALA A:404 , LEU A:408 , HIS A:545 , GLN A:548 , ILE A:593 , VAL A:594 , LEU A:597 , ILE A:663
BINDING SITE FOR RESIDUE RS7 A 841
3
NUL
UNKNOWN
HIS A:361 , HIS A:366 , HIS A:541 , HIS A:545 , FE2 A:840 , ILE A:663
CATALYTIC IRON AND ITS LIGANDS.
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: PLAT (A:2-115)
2: LIPOXYGENASE_3 (A:115-663)
3: LIPOXYGENASE_1 (A:356-370)
4: LIPOXYGENASE_2 (A:383-393)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PLAT
PS50095
PLAT domain profile.
LOX15_RABIT
2-115
1
A:2-115
2
LIPOXYGENASE_3
PS51393
Lipoxygenase iron-binding catalytic domain profile.
LOX15_RABIT
115-663
1
A:115-663
3
LIPOXYGENASE_1
PS00711
Lipoxygenases iron-binding region signature 1.
LOX15_RABIT
356-370
1
A:356-370
4
LIPOXYGENASE_2
PS00081
Lipoxygenases iron-binding region signature 2.
LOX15_RABIT
383-393
1
A:383-393
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1loxa1 (A:113-663)
2a: SCOP_d1loxa2 (A:2-112)
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Protein Domains
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(
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(
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
Lipoxigenase
(27)
Superfamily
:
Lipoxigenase
(27)
Family
:
Animal lipoxigenases
(2)
Protein domain
:
15-Lipoxygenase
(1)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(1)
1a
d1loxa1
A:113-663
Class
:
All beta proteins
(24004)
Fold
:
Lipase/lipooxygenase domain (PLAT/LH2 domain)
(47)
Superfamily
:
Lipase/lipooxygenase domain (PLAT/LH2 domain)
(47)
Family
:
Lipoxigenase N-terminal domain
(24)
Protein domain
:
15-Lipoxygenase
(1)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(1)
2a
d1loxa2
A:2-112
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1loxA03 (A:240-352)
2a: CATH_1loxA01 (A:113-239,A:353-660)
3a: CATH_1loxA02 (A:2-112)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Nuclear Transport Factor 2; Chain: A,
(517)
Homologous Superfamily
:
[code=3.10.450.60, no name defined]
(26)
Rabbit (Oryctolagus cuniculus)
(2)
1a
1loxA03
A:240-352
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Lipoxygenase-1; domain 5
(26)
Homologous Superfamily
:
Lipoxygenase-1; Domain 5
(26)
Rabbit (Oryctolagus cuniculus)
(2)
2a
1loxA01
A:113-239,A:353-660
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Lipoxygenase-1
(46)
Homologous Superfamily
:
Lipoxygenase-1
(44)
Rabbit (Oryctolagus cuniculus)
(2)
3a
1loxA02
A:2-112
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Pfam Domains
(2, 3)
Info
all PFAM domains
1a: PFAM_PLAT_1loxA01 (A:4-111)
2a: PFAM_Lipoxygenase_1loxA02 (A:212-655)
2b: PFAM_Lipoxygenase_1loxA03 (A:212-655)
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Clan
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PLAT
(25)
Family
:
PLAT
(25)
Oryctolagus cuniculus (Rabbit)
(2)
1a
PLAT-1loxA01
A:4-111
Clan
:
no clan defined [family: Lipoxygenase]
(13)
Family
:
Lipoxygenase
(13)
Oryctolagus cuniculus (Rabbit)
(2)
2a
Lipoxygenase-1loxA02
A:212-655
2b
Lipoxygenase-1loxA03
A:212-655
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Asymmetric Unit 1
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