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1LOS
Asym. Unit
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Asym.Unit (138 KB)
Biol.Unit 1 (70 KB)
Biol.Unit 2 (67 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF OROTIDINE MONOPHOSPHATE DECARBOXYLASE MUTANT DELTAR203A COMPLEXED WITH 6-AZAUMP
Authors
:
N. Wu, E. F. Pai
Date
:
06 May 02 (Deposition) - 07 Aug 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Tim Barrel, Lyase
(Keyword Search:
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Reference
:
N. Wu, E. F. Pai
Crystal Structures Of Inhibitor Complexes Reveal An Alternate Binding Mode In Orotidine-5'-Monophosphate Decarboxylase.
J. Biol. Chem. V. 277 28080 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: 6-AZA URIDINE 5'-MONOPHOSPHATE (UP6a)
1b: 6-AZA URIDINE 5'-MONOPHOSPHATE (UP6b)
1c: 6-AZA URIDINE 5'-MONOPHOSPHATE (UP6c)
1d: 6-AZA URIDINE 5'-MONOPHOSPHATE (UP6d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
UP6
4
Ligand/Ion
6-AZA URIDINE 5'-MONOPHOSPHATE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:18 , ASP A:20 , LYS A:42 , LYS A:72 , MET A:126 , SER A:127 , PRO A:180 , GLY A:202 , ALA A:203 , HOH A:4016 , HOH A:4024 , HOH A:4033 , HOH A:4036 , HOH A:4037 , HOH A:4087 , HOH A:4088 , HOH A:4206 , ASP B:1075 , ILE B:1076 , THR B:1079
BINDING SITE FOR RESIDUE UP6 A 5001
2
AC2
SOFTWARE
ASP A:75 , ILE A:76 , THR A:79 , ALA B:1018 , ASP B:1020 , LYS B:1042 , LYS B:1072 , MET B:1126 , SER B:1127 , PRO B:1180 , GLY B:1202 , ALA B:1203 , HOH B:4057 , HOH B:4061 , HOH B:4069 , HOH B:4148 , HOH B:4152
BINDING SITE FOR RESIDUE UP6 B 5002
3
AC3
SOFTWARE
ALA C:2018 , ASP C:2020 , LYS C:2042 , LYS C:2072 , MET C:2126 , SER C:2127 , PRO C:2180 , GLY C:2202 , ALA C:2203 , HOH C:4154 , HOH C:4156 , HOH C:4169 , ASP D:3075 , ILE D:3076 , THR D:3079
BINDING SITE FOR RESIDUE UP6 C 5003
4
AC4
SOFTWARE
ASP C:2075 , ILE C:2076 , THR C:2079 , ASP D:3020 , LYS D:3042 , LYS D:3072 , MET D:3126 , SER D:3127 , PRO D:3180 , GLY D:3202 , ALA D:3203 , HOH D:4054 , HOH D:4161 , HOH D:4193 , HOH D:4195 , HOH D:4205
BINDING SITE FOR RESIDUE UP6 D 5004
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: OMPDECASE (A:67-80,B:1067-1080,C:2067-2080,D:...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
OMPDECASE
PS00156
Orotidine 5'-phosphate decarboxylase active site.
PYRF_METTH
67-80
4
A:67-80
B:1067-1080
C:2067-2080
D:3067-3080
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1losa_ (A:)
1b: SCOP_d1losb_ (B:)
1c: SCOP_d1losc_ (C:)
1d: SCOP_d1losd_ (D:)
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Protein Domains
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Ribulose-phoshate binding barrel
(356)
Family
:
Decarboxylase
(172)
Protein domain
:
Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
(28)
Methanobacterium thermoautotrophicum [TaxId: 145262]
(16)
1a
d1losa_
A:
1b
d1losb_
B:
1c
d1losc_
C:
1d
d1losd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1losA00 (A:3-222)
1b: CATH_1losD00 (D:3004-3221)
1c: CATH_1losB00 (B:1012-1221)
1d: CATH_1losC00 (C:2013-2207)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Delta h (Methanothermobacter thermautotrophicus str)
(13)
1a
1losA00
A:3-222
1b
1losD00
D:3004-3221
1c
1losB00
B:1012-1221
1d
1losC00
C:2013-2207
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_OMPdecase_1losD01 (D:3013-3218)
1b: PFAM_OMPdecase_1losD02 (D:3013-3218)
1c: PFAM_OMPdecase_1losD03 (D:3013-3218)
1d: PFAM_OMPdecase_1losD04 (D:3013-3218)
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Clan
:
TIM_barrel
(694)
Family
:
OMPdecase
(84)
Methanobacterium thermoautotrophicum (strain Delta H)
(55)
1a
OMPdecase-1losD01
D:3013-3218
1b
OMPdecase-1losD02
D:3013-3218
1c
OMPdecase-1losD03
D:3013-3218
1d
OMPdecase-1losD04
D:3013-3218
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Asym.Unit (138 KB)
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