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1LOD
Biol. Unit 1
Info
Asym.Unit (158 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (77 KB)
Biol.Unit 3 (41 KB)
Biol.Unit 4 (40 KB)
Biol.Unit 5 (40 KB)
Biol.Unit 6 (40 KB)
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(1)
Title
:
INTERACTION OF A LEGUME LECTIN WITH TWO COMPONENTS OF THE BACTERIAL CELL WALL
Authors
:
Y. Bourne, C. Cambillau
Date
:
27 Jan 93 (Deposition) - 30 Apr 94 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: G,H (1x)
Biol. Unit 4: C,D (1x)
Biol. Unit 5: A,B (1x)
Biol. Unit 6: E,F (1x)
Keywords
:
Lectin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Bourne, A. Ayouba, P. Rouge, C. Cambillau
Interaction Of A Legume Lectin With Two Components Of The Bacterial Cell Wall. A Crystallographic Study.
J. Biol. Chem. V. 269 9429 1994
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
3a: MURAMIC ACID (MURa)
3b: MURAMIC ACID (MURb)
3c: MURAMIC ACID (MURc)
3d: MURAMIC ACID (MURd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
MN
-1
Ligand/Ion
MANGANESE (II) ION
3
MUR
2
Ligand/Ion
MURAMIC ACID
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC9 (SOFTWARE)
6: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:121 , PHE A:123 , ASN A:125 , ASP A:129 , HOH A:268 , HOH A:269
BINDING SITE FOR RESIDUE CA A 228
2
AC2
SOFTWARE
GLU A:119 , ASP A:121 , ASP A:129 , HIS A:136 , HOH A:275
BINDING SITE FOR RESIDUE MN A 229
3
AC3
SOFTWARE
ASP C:121 , PHE C:123 , ASN C:125 , ASP C:129 , HOH C:490 , HOH C:491
BINDING SITE FOR RESIDUE CA C 458
4
AC4
SOFTWARE
GLU C:119 , ASP C:121 , ASP C:129 , HIS C:136 , HOH C:492 , HOH C:493
BINDING SITE FOR RESIDUE MN C 459
5
AC9
SOFTWARE
ALA A:80 , ASP A:81 , GLY A:98 , GLY A:99 , TYR A:100 , PHE A:123 , ASN A:125 , HOH A:274 , HOH A:305 , GLY B:29 , ALA B:30 , GLU B:31
BINDING SITE FOR RESIDUE MUR A 230
6
BC3
SOFTWARE
ALA C:80 , ASP C:81 , GLY C:98 , GLY C:99 , TYR C:100 , PHE C:123 , ASN C:125 , TRP C:128 , GLY D:29 , ALA D:30 , GLU D:31
BINDING SITE FOR RESIDUE MUR C 460
[
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_LECB_LATOC_001 (Q16P, chain A/C, )
2: VAR_LECB_LATOC_002 (S66A, chain A/C, )
3: VAR_LECB_LATOC_003 (A168G, chain A/C, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_LECB_LATOC_001
*
Q
16
P
LECB_LATOC
---
---
A/C
Q
16
P
2
UniProt
VAR_LECB_LATOC_002
*
S
66
A
LECB_LATOC
---
---
A/C
S
66
A
3
UniProt
VAR_LECB_LATOC_003
*
A
168
G
LECB_LATOC
---
---
A/C
A
168
G
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: LECTIN_LEGUME_ALPHA (B:16-25,D:16-25)
2: LECTIN_LEGUME_BETA (A:116-122,C:116-122)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LECTIN_LEGUME_ALPHA
PS00308
Legume lectins alpha-chain signature.
LEC1_LATOC
16-25
2
B:16-25
D:16-25
-
-
2
LECTIN_LEGUME_BETA
PS00307
Legume lectins beta-chain signature.
LECB_LATOC
116-122
2
A:116-122
C:116-122
-
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1lod_1 (A:,B:)
1b: SCOP_d1lod_2 (C:,D:)
1c: SCOP_d1lod_3 (E:,F:)
1d: SCOP_d1lod_4 (G:,H:)
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)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Legume lectins
(238)
Protein domain
:
Legume lectin
(110)
Lathyrus ochrus, isolectin I [TaxId: 3858]
(7)
1a
d1lod.1
A:,B:
1b
d1lod.2
C:,D:
1c
d1lod.3
E:,F:
1d
d1lod.4
G:,H:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1lodA00 (A:1-180)
1b: CATH_1lodC00 (C:1-180)
1c: CATH_1lodE00 (E:1-180)
1d: CATH_1lodG00 (G:1-180)
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Yellow-flowered pea (Lathyrus ochrus)
(8)
1a
1lodA00
A:1-180
1b
1lodC00
C:1-180
1c
1lodE00
E:1-180
1d
1lodG00
G:1-180
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Lectin_legB_1lodH01 (H:2-43)
1b: PFAM_Lectin_legB_1lodH02 (H:2-43)
1c: PFAM_Lectin_legB_1lodH03 (H:2-43)
1d: PFAM_Lectin_legB_1lodH04 (H:2-43)
1e: PFAM_Lectin_legB_1lodG01 (G:2-180)
1f: PFAM_Lectin_legB_1lodG02 (G:2-180)
1g: PFAM_Lectin_legB_1lodG03 (G:2-180)
1h: PFAM_Lectin_legB_1lodG04 (G:2-180)
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Clans
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(
)
Organisms
(
)
(
)
Clan
:
Concanavalin
(293)
Family
:
Lectin_legB
(93)
Lathyrus ochrus (Yellow-flowered pea)
(6)
1a
Lectin_legB-1lodH01
H:2-43
1b
Lectin_legB-1lodH02
H:2-43
1c
Lectin_legB-1lodH03
H:2-43
1d
Lectin_legB-1lodH04
H:2-43
1e
Lectin_legB-1lodG01
G:2-180
1f
Lectin_legB-1lodG02
G:2-180
1g
Lectin_legB-1lodG03
G:2-180
1h
Lectin_legB-1lodG04
G:2-180
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(currently selected atoms:
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Protein & NOT Site
Protein & NOT PROSITE
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Chain B
Chain C
Chain D
Asymmetric Unit 1
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Asym.Unit (158 KB)
Header - Asym.Unit
Biol.Unit 1 (77 KB)
Header - Biol.Unit 1
Biol.Unit 2 (77 KB)
Header - Biol.Unit 2
Biol.Unit 3 (41 KB)
Header - Biol.Unit 3
Biol.Unit 4 (40 KB)
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Biol.Unit 5 (40 KB)
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