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1LNZ
Asym. Unit
Info
Asym.Unit (123 KB)
Biol.Unit 1 (61 KB)
Biol.Unit 2 (59 KB)
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(1)
Title
:
STRUCTURE OF THE OBG GTP-BINDING PROTEIN
Authors
:
J. Buglino, V. Shen, P. Hakimian, C. D. Lima, S. K. Burley, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date
:
04 May 02 (Deposition) - 16 Sep 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Gtpase, Obg, Stringent Factor, Stress Response, Sporulation, Large G-Protein, Structural Genomics, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Cell Cycle
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Buglino, V. Shen, P. Hakimian, C. D. Lima
Structural And Biochemical Analysis Of The Obg Gtp Binding Protein
Structure V. 10 1581 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 28)
Info
All Hetero Components
1a: GUANOSINE-5',3'-TETRAPHOSPHATE (G4Pa)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
G4P
1
Ligand/Ion
GUANOSINE-5',3'-TETRAPHOSPHATE
2
MG
7
Ligand/Ion
MAGNESIUM ION
3
MSE
20
Mod. Amino Acid
SELENOMETHIONINE
[
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]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER B:172 , G4P B:600
BINDING SITE FOR RESIDUE MG B 901
2
AC2
SOFTWARE
G4P B:600
BINDING SITE FOR RESIDUE MG B 902
3
AC3
SOFTWARE
ASN B:142 , HOH B:1019 , HOH B:1024 , HOH B:1077
BINDING SITE FOR RESIDUE MG B 903
4
AC4
SOFTWARE
GLN A:222 , GLY A:225 , LEU A:226 , GLY A:227 , HOH A:995 , HOH A:996 , HOH A:997
BINDING SITE FOR RESIDUE MG A 904
5
AC5
SOFTWARE
GLU A:144 , HOH B:1014
BINDING SITE FOR RESIDUE MG B 905
6
AC6
SOFTWARE
ASP A:203
BINDING SITE FOR RESIDUE MG A 906
7
AC7
SOFTWARE
ASN B:17
BINDING SITE FOR RESIDUE MG B 907
8
AC8
SOFTWARE
SER B:168 , VAL B:169 , GLY B:170 , LYS B:171 , SER B:172 , THR B:173 , ASN B:282 , LYS B:283 , ASP B:285 , SER B:310 , ALA B:311 , VAL B:312 , MG B:901 , MG B:902 , HOH B:918 , HOH B:943 , HOH B:1029
BINDING SITE FOR RESIDUE G4P B 600
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: G_OBG (A:159-329,B:159-329)
2: GTP1_OBG (A:212-225,B:212-218)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
G_OBG
PS51710
OBG-type guanine nucleotide-binding (G) domain profile.
OBG_BACSU
159-329
2
A:159-329
B:159-329
2
GTP1_OBG
PS00905
GTP1/OBG family signature.
OBG_BACSU
212-225
2
A:212-225
B:212-218
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1lnza1 (A:1-157)
1b: SCOP_d1lnzb1 (B:1-157)
2a: SCOP_d1lnza2 (A:158-342)
2b: SCOP_d1lnzb2 (B:158-337)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Obg-fold
(2)
Superfamily
:
Obg GTP-binding protein N-terminal domain
(2)
Family
:
Obg GTP-binding protein N-terminal domain
(2)
Protein domain
:
Obg GTP-binding protein N-terminal domain
(2)
Bacillus subtilis [TaxId: 1423]
(1)
1a
d1lnza1
A:1-157
1b
d1lnzb1
B:1-157
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Obg GTP-binding protein middle domain
(2)
Bacillus subtilis [TaxId: 1423]
(1)
2a
d1lnza2
A:158-342
2b
d1lnzb2
B:158-337
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1lnzA02 (A:158-342)
1b: CATH_1lnzB02 (B:158-337)
2a: CATH_1lnzA01 (A:2-157)
2b: CATH_1lnzB01 (B:2-157)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Bacillus subtilis. Organism_taxid: 1423.
(1)
1a
1lnzA02
A:158-342
1b
1lnzB02
B:158-337
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Spo0b-associated Gtp-binding Protein; Chain: A,
(2)
Homologous Superfamily
:
[code=2.70.210.12, no name defined]
(2)
Bacillus subtilis. Organism_taxid: 1423.
(1)
2a
1lnzA01
A:2-157
2b
1lnzB01
B:2-157
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_MMR_HSR1_1lnzB01 (B:160-283)
1b: PFAM_MMR_HSR1_1lnzB02 (B:160-283)
2a: PFAM_GTP1_OBG_1lnzB03 (B:2-157)
2b: PFAM_GTP1_OBG_1lnzB04 (B:2-157)
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Clans
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Families
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(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
MMR_HSR1
(17)
Bacillus subtilis
(4)
1a
MMR_HSR1-1lnzB01
B:160-283
1b
MMR_HSR1-1lnzB02
B:160-283
Clan
:
no clan defined [family: GTP1_OBG]
(2)
Family
:
GTP1_OBG
(2)
Bacillus subtilis
(1)
2a
GTP1_OBG-1lnzB03
B:2-157
2b
GTP1_OBG-1lnzB04
B:2-157
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Asym.Unit (123 KB)
Header - Asym.Unit
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