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1LN3
Asym. Unit
Info
Asym.Unit (79 KB)
Biol.Unit 1 (38 KB)
Biol.Unit 2 (38 KB)
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(1)
Title
:
STRUCTURE OF HUMAN PHOSPHATIDYLCHOLINE TRANSFER PROTEIN IN COMPLEX WITH PALMITOYL-LINOLEOYL PHOSPHATIDYLCHOLINE (SELENO-MET PROTEIN)
Authors
:
S. L. Roderick, W. W. Chan, D. S. Agate, L. R. Olsen, M. W. Vetting, K. R. Rajashankar, D. E. Cohen
Date
:
02 May 02 (Deposition) - 26 Jun 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Start Domain, Lipid Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. L. Roderick, W. W. Chan, D. S. Agate, L. R. Olsen, M. W. Vetting, K. R. Rajashankar, D. E. Cohen
Structure Of Human Phosphatidylcholine Transfer Protein In Complex With Its Ligand.
Nat. Struct. Biol. V. 9 507 2002
(for further references see the
PDB file header
)
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Hetero Components
(2, 14)
Info
All Hetero Components
1a: 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO... (CPLa)
1b: 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO... (CPLb)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CPL
2
Ligand/Ion
1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
2
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:33 , VAL A:34 , TYR A:54 , LEU A:68 , TYR A:72 , ARG A:78 , TRP A:101 , VAL A:103 , TYR A:114 , TYR A:116 , GLN A:157 , LEU A:159 , MSE A:173 , TYR A:175 , TRP A:190 , ALA A:191 , VAL A:196 , PHE A:199 , LEU A:200 , HOH A:2013
BINDING SITE FOR RESIDUE CPL A 300
2
AC2
SOFTWARE
LEU B:33 , ILE B:41 , TYR B:54 , VAL B:56 , TYR B:72 , ARG B:78 , TYR B:84 , TRP B:101 , VAL B:103 , TYR B:105 , TYR B:114 , TYR B:116 , TYR B:155 , GLN B:157 , LEU B:159 , MSE B:173 , TYR B:175 , VAL B:196 , PHE B:199
BINDING SITE FOR RESIDUE CPL B 301
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_052070 (E10A, chain A/B, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_052070
E
10
A
PPCT_HUMAN
Polymorphism
12941739
A/B
E
10
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(6, 12)
Info
All Exons
Exon 1.1a (A:8-47 | B:8-47)
Exon 1.2 (A:48-87 | B:48-87)
Exon 1.3 (A:87-113 | B:87-113)
Exon 1.4 (A:114-171 | B:114-171)
Exon 1.5 (A:171-193 | B:171-193)
Exon 1.6b (A:194-210 | B:194-210)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6b
7: Boundary 1.6b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000268896
1a
ENSE00001302376
chr17:
53828356-53828605
250
PPCT_HUMAN
1-47
47
2
A:8-47
B:8-47
40
40
1.2
ENST00000268896
2
ENSE00001731482
chr17:
53844696-53844813
118
PPCT_HUMAN
48-87
40
2
A:48-87
B:48-87
40
40
1.3
ENST00000268896
3
ENSE00001247504
chr17:
53848467-53848546
80
PPCT_HUMAN
87-113
27
2
A:87-113
B:87-113
27
27
1.4
ENST00000268896
4
ENSE00001316597
chr17:
53851085-53851256
172
PPCT_HUMAN
114-171
58
2
A:114-171
B:114-171
58
58
1.5
ENST00000268896
5
ENSE00000946954
chr17:
53852153-53852220
68
PPCT_HUMAN
171-193
23
2
A:171-193
B:171-193
23
23
1.6b
ENST00000268896
6b
ENSE00001376208
chr17:
53853396-53854748
1353
PPCT_HUMAN
194-214
21
2
A:194-210
B:194-210
17
17
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1ln3a_ (A:)
1b: SCOP_d1ln3b_ (B:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
TBP-like
(289)
Superfamily
:
Bet v1-like
(158)
Family
:
STAR domain
(6)
Protein domain
:
Phosphatidylcholine transfer protein
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1ln3a_
A:
1b
d1ln3b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1ln3A00 (A:8-210)
1b: CATH_1ln3B00 (B:8-210)
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)
Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4
(47)
Homologous Superfamily
:
[code=3.30.530.20, no name defined]
(47)
Human (Homo sapiens)
(6)
1a
1ln3A00
A:8-210
1b
1ln3B00
B:8-210
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_START_1ln3B01 (B:10-210)
1b: PFAM_START_1ln3B02 (B:10-210)
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Clan
:
Bet_V_1_like
(93)
Family
:
START
(8)
Homo sapiens (Human)
(6)
1a
START-1ln3B01
B:10-210
1b
START-1ln3B02
B:10-210
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Asymmetric Unit 1
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