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1LM5
Asym. Unit
Info
Asym.Unit (69 KB)
Biol.Unit 1 (66 KB)
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(1)
Title
:
STRUCTURES OF TWO INTERMEDIATE FILAMENT-BINDING FRAGMENTS OF DESMOPLAKIN REVEAL A UNIQUE REPEAT MOTIF STRUCTURE
Authors
:
H. J. Choi, S. Park-Snyder, L. T. Pascoe, K. J. Green, W. I. Weis
Date
:
30 Apr 02 (Deposition) - 31 Jul 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Plakin Repeat, , Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. J. Choi, S. Park-Snyder, L. T. Pascoe, K. J. Green, W. I. Weis
Structures Of Two Intermediate Filament-Binding Fragments Of Desmoplakin Reveal A Unique Repeat Motif Structure.
Nat. Struct. Biol. V. 9 612 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(1, 2)
Info
All Exons
Exon 1.24b (A:2616-2811 (gaps) | B:2613-2808 (...)
View:
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All Exon Boundaries
1: Boundary 1.23b/1.24b
2: Boundary 1.24b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000379802
1a
ENSE00002025723
chr6:
7541808-7542318
511
DESP_HUMAN
1-57
57
0
-
-
1.2
ENST00000379802
2
ENSE00001155370
chr6:
7555951-7556053
103
DESP_HUMAN
57-91
35
0
-
-
1.3
ENST00000379802
3
ENSE00001155361
chr6:
7558349-7558497
149
DESP_HUMAN
92-141
50
0
-
-
1.4a
ENST00000379802
4a
ENSE00001155357
chr6:
7559459-7559633
175
DESP_HUMAN
141-199
59
0
-
-
1.5
ENST00000379802
5
ENSE00001155350
chr6:
7562885-7563013
129
DESP_HUMAN
200-242
43
0
-
-
1.6
ENST00000379802
6
ENSE00000683077
chr6:
7563969-7564019
51
DESP_HUMAN
243-259
17
0
-
-
1.7a
ENST00000379802
7a
ENSE00001155338
chr6:
7565592-7565753
162
DESP_HUMAN
260-313
54
0
-
-
1.8
ENST00000379802
8
ENSE00001155330
chr6:
7566610-7566714
105
DESP_HUMAN
314-348
35
0
-
-
1.9
ENST00000379802
9
ENSE00001155018
chr6:
7567587-7567682
96
DESP_HUMAN
349-380
32
0
-
-
1.10
ENST00000379802
10
ENSE00001155013
chr6:
7568014-7568139
126
DESP_HUMAN
381-422
42
0
-
-
1.11
ENST00000379802
11
ENSE00001155008
chr6:
7568670-7568822
153
DESP_HUMAN
423-473
51
0
-
-
1.12
ENST00000379802
12
ENSE00001155002
chr6:
7569419-7569573
155
DESP_HUMAN
474-525
52
0
-
-
1.13
ENST00000379802
13
ENSE00001154996
chr6:
7570670-7570796
127
DESP_HUMAN
525-567
43
0
-
-
1.14
ENST00000379802
14
ENSE00001154992
chr6:
7571616-7571817
202
DESP_HUMAN
568-635
68
0
-
-
1.15
ENST00000379802
15
ENSE00001154985
chr6:
7572075-7572301
227
DESP_HUMAN
635-710
76
0
-
-
1.16
ENST00000379802
16
ENSE00001154981
chr6:
7574319-7574485
167
DESP_HUMAN
711-766
56
0
-
-
1.17
ENST00000379802
17
ENSE00001154978
chr6:
7574890-7575028
139
DESP_HUMAN
766-812
47
0
-
-
1.18
ENST00000379802
18
ENSE00001154975
chr6:
7575528-7575721
194
DESP_HUMAN
813-877
65
0
-
-
1.19
ENST00000379802
19
ENSE00001154968
chr6:
7576527-7576689
163
DESP_HUMAN
877-931
55
0
-
-
1.20
ENST00000379802
20
ENSE00001154962
chr6:
7577192-7577275
84
DESP_HUMAN
932-959
28
0
-
-
1.21
ENST00000379802
21
ENSE00001154954
chr6:
7578012-7578119
108
DESP_HUMAN
960-995
36
0
-
-
1.22
ENST00000379802
22
ENSE00001154944
chr6:
7578697-7578795
99
DESP_HUMAN
996-1028
33
0
-
-
1.23b
ENST00000379802
23b
ENSE00001154938
chr6:
7579508-7581802
2295
DESP_HUMAN
1029-1793
765
0
-
-
1.24b
ENST00000379802
24b
ENSE00001482558
chr6:
7582875-7586950
4076
DESP_HUMAN
1794-2871
1078
2
A:2616-2811 (gaps)
B:2613-2808 (gaps)
196
196
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1lm5a_ (A:)
1b: SCOP_d1lm5b_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-hairpin-alpha-hairpin repeat
(81)
Superfamily
:
Plakin repeat
(2)
Family
:
Plakin repeat
(2)
Protein domain
:
Desmoplakin intermediate filament-binding domains
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1lm5a_
A:
1b
d1lm5b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1lm5B00 (B:2613-2808)
1b: CATH_1lm5A00 (A:2616-2811)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
beta-hairpin-alpha-hairpin repeat
(2)
Homologous Superfamily
:
Plakin repeat
(2)
Human (Homo sapiens)
(2)
1a
1lm5B00
B:2613-2808
1b
1lm5A00
A:2616-2811
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Plectin_1lm5B01 (B:2724-2768)
1b: PFAM_Plectin_1lm5B02 (B:2724-2768)
1c: PFAM_Plectin_1lm5B03 (B:2724-2768)
1d: PFAM_Plectin_1lm5B04 (B:2724-2768)
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Clan
:
no clan defined [family: Plectin]
(2)
Family
:
Plectin
(2)
Homo sapiens (Human)
(2)
1a
Plectin-1lm5B01
B:2724-2768
1b
Plectin-1lm5B02
B:2724-2768
1c
Plectin-1lm5B03
B:2724-2768
1d
Plectin-1lm5B04
B:2724-2768
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Asymmetric Unit 1
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Asym.Unit (69 KB)
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