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1LLU
Biol. Unit 1
Info
Asym.Unit (445 KB)
Biol.Unit 1 (222 KB)
Biol.Unit 2 (221 KB)
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(1)
Title
:
THE TERNARY COMPLEX OF PSEUDOMONAS AERUGINOSA ALCOHOL DEHYDROGENASE WITH ITS COENZYME AND WEAK SUBSTRATE
Authors
:
I. Levin, G. Meiri, M. Peretz, F. Frolow, Y. Burstein
Date
:
30 Apr 02 (Deposition) - 11 Nov 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Enzyme-Coenzyme-Substrate Complex, Proton Relay System, Nadh, Alcohol Dehydrogenase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Levin, G. Meiri, M. Peretz, Y. Burstein, F. Frolow
The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Nadh And Ethylene Glycol.
Protein Sci. V. 13 1547 2004
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
2c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
2d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
2e: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADe)
2f: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADf)
2g: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADg)
2h: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADh)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
3i: ZINC ION (ZNi)
3j: ZINC ION (ZNj)
3k: ZINC ION (ZNk)
3l: ZINC ION (ZNl)
3m: ZINC ION (ZNm)
3n: ZINC ION (ZNn)
3o: ZINC ION (ZNo)
3p: ZINC ION (ZNp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
2
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
3
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: BC8 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC1 (SOFTWARE)
12: CC2 (SOFTWARE)
13: CC3 (SOFTWARE)
14: CC4 (SOFTWARE)
15: CC5 (SOFTWARE)
16: CC6 (SOFTWARE)
17: CC7 (SOFTWARE)
18: CC8 (SOFTWARE)
19: CC9 (SOFTWARE)
20: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:44 , HIS A:67 , CYS A:154 , NAD A:1250 , EDO A:1260
BINDING SITE FOR RESIDUE ZN A 343
02
AC2
SOFTWARE
CYS A:98 , CYS A:101 , CYS A:104 , CYS A:112
BINDING SITE FOR RESIDUE ZN A 344
03
AC3
SOFTWARE
CYS B:44 , HIS B:67 , CYS B:154 , EDO B:1262
BINDING SITE FOR RESIDUE ZN B 343
04
AC4
SOFTWARE
CYS B:98 , GLY B:99 , CYS B:101 , CYS B:104 , CYS B:112
BINDING SITE FOR RESIDUE ZN B 344
05
AC5
SOFTWARE
CYS C:44 , HIS C:67 , CYS C:154 , NAD C:1252 , EDO C:1263
BINDING SITE FOR RESIDUE ZN C 343
06
AC6
SOFTWARE
CYS C:98 , CYS C:101 , CYS C:104 , CYS C:112
BINDING SITE FOR RESIDUE ZN C 344
07
AC7
SOFTWARE
CYS D:44 , HIS D:67 , CYS D:154 , EDO D:1265
BINDING SITE FOR RESIDUE ZN D 343
08
AC8
SOFTWARE
CYS D:98 , GLY D:99 , CYS D:101 , CYS D:104 , CYS D:112
BINDING SITE FOR RESIDUE ZN D 344
09
BC8
SOFTWARE
CYS A:44 , HIS A:45 , THR A:46 , HIS A:49 , TRP A:55 , THR A:158 , SER A:177 , GLY A:178 , ILE A:179 , GLY A:180 , GLY A:181 , LEU A:182 , ASP A:201 , ILE A:202 , LYS A:206 , THR A:243 , ALA A:244 , VAL A:245 , SER A:246 , VAL A:266 , LEU A:268 , SER A:290 , ILE A:291 , VAL A:292 , ARG A:337 , ZN A:343 , EDO A:1260 , HOH A:1264 , HOH A:1279 , HOH A:1345 , HOH A:1414 , VAL B:281 , HOH G:893 , HOH G:908 , HOH G:944 , HOH G:1015
BINDING SITE FOR RESIDUE NAD A 1250
10
BC9
SOFTWARE
THR A:46 , TRP A:55 , HIS A:67 , TRP A:93 , CYS A:154 , LEU A:268 , VAL A:292 , ZN A:343 , NAD A:1250
BINDING SITE FOR RESIDUE EDO A 1260
11
CC1
SOFTWARE
HIS A:45 , ASP A:54
BINDING SITE FOR RESIDUE EDO A 1261
12
CC2
SOFTWARE
CYS B:44 , HIS B:45 , THR B:46 , HIS B:49 , THR B:158 , GLY B:178 , ILE B:179 , GLY B:180 , GLY B:181 , LEU B:182 , ASP B:201 , ILE B:202 , LYS B:206 , THR B:243 , ALA B:244 , VAL B:245 , SER B:246 , VAL B:266 , GLY B:267 , LEU B:268 , SER B:290 , ILE B:291 , VAL B:292 , ARG B:337 , EDO B:1262 , HOH B:1291 , HOH B:1317
BINDING SITE FOR RESIDUE NAD B 1251
13
CC3
SOFTWARE
THR B:46 , TRP B:55 , HIS B:67 , TRP B:93 , CYS B:154 , VAL B:292 , ZN B:343 , NAD B:1251
BINDING SITE FOR RESIDUE EDO B 1262
14
CC4
SOFTWARE
CYS C:44 , HIS C:45 , THR C:46 , HIS C:49 , TRP C:55 , THR C:158 , SER C:177 , GLY C:178 , ILE C:179 , GLY C:180 , GLY C:181 , LEU C:182 , ASP C:201 , ILE C:202 , LYS C:206 , THR C:243 , ALA C:244 , VAL C:245 , SER C:246 , VAL C:266 , LEU C:268 , SER C:290 , ILE C:291 , VAL C:292 , ARG C:337 , ZN C:343 , EDO C:1263 , HOH C:1273 , HOH C:1288 , HOH C:1354 , HOH C:1423 , VAL D:281 , HOH E:617 , HOH E:632 , HOH E:668 , HOH E:739
BINDING SITE FOR RESIDUE NAD C 1252
15
CC5
SOFTWARE
THR C:46 , TRP C:55 , HIS C:67 , TRP C:93 , CYS C:154 , LEU C:268 , VAL C:292 , ZN C:343 , NAD C:1252
BINDING SITE FOR RESIDUE EDO C 1263
16
CC6
SOFTWARE
HIS C:45 , ASP C:54
BINDING SITE FOR RESIDUE EDO C 1264
17
CC7
SOFTWARE
CYS D:44 , HIS D:45 , THR D:46 , HIS D:49 , THR D:158 , GLY D:178 , ILE D:179 , GLY D:180 , GLY D:181 , LEU D:182 , ASP D:201 , ILE D:202 , LYS D:206 , THR D:243 , ALA D:244 , VAL D:245 , SER D:246 , VAL D:266 , GLY D:267 , LEU D:268 , SER D:290 , ILE D:291 , VAL D:292 , ARG D:337 , EDO D:1265 , HOH D:1298 , HOH D:1324
BINDING SITE FOR RESIDUE NAD D 1253
18
CC8
SOFTWARE
THR D:46 , TRP D:55 , HIS D:67 , TRP D:93 , CYS D:154 , VAL D:292 , ZN D:343 , NAD D:1253
BINDING SITE FOR RESIDUE EDO D 1265
19
CC9
SOFTWARE
HOH C:1281 , HOH C:1292 , CYS E:44 , HIS E:45 , THR E:46 , HIS E:49 , TRP E:55 , THR E:158 , SER E:177 , GLY E:178 , ILE E:179 , GLY E:180 , GLY E:181 , LEU E:182 , ASP E:201 , ILE E:202 , LYS E:206 , THR E:243 , ALA E:244 , VAL E:245 , SER E:246 , VAL E:266 , LEU E:268 , SER E:290 , ILE E:291 , VAL E:292 , ARG E:337 , ZN E:343 , HOH E:603 , HOH E:626 , HOH E:729 , HOH E:848 , EDO E:1266 , VAL F:281
BINDING SITE FOR RESIDUE NAD E 1254
20
DC5
SOFTWARE
HOH A:1272 , HOH A:1283 , HOH A:1309 , HOH A:1350 , CYS G:44 , HIS G:45 , THR G:46 , HIS G:49 , TRP G:55 , THR G:158 , SER G:177 , GLY G:178 , ILE G:179 , GLY G:180 , GLY G:181 , LEU G:182 , ASP G:201 , ILE G:202 , LYS G:206 , THR G:243 , ALA G:244 , VAL G:245 , SER G:246 , VAL G:266 , LEU G:268 , SER G:290 , ILE G:291 , VAL G:292 , ARG G:337 , ZN G:343 , HOH G:879 , HOH G:902 , HOH G:1005 , HOH G:1124 , EDO G:1269 , VAL H:281
BINDING SITE FOR RESIDUE NAD G 1256
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d1llua1 (A:2-143,A:310-342)
1b: SCOP_d1llub1 (B:2-143,B:310-342)
1c: SCOP_d1lluc1 (C:2-143,C:310-342)
1d: SCOP_d1llud1 (D:2-143,D:310-342)
1e: SCOP_d1llue1 (E:2-143,E:310-342)
1f: SCOP_d1lluf1 (F:2-143,F:310-342)
1g: SCOP_d1llug1 (G:2-143,G:310-342)
1h: SCOP_d1lluh1 (H:2-143,H:310-342)
2a: SCOP_d1llua2 (A:144-309)
2b: SCOP_d1llub2 (B:144-309)
2c: SCOP_d1lluc2 (C:144-309)
2d: SCOP_d1llud2 (D:144-309)
2e: SCOP_d1llue2 (E:144-309)
2f: SCOP_d1lluf2 (F:144-309)
2g: SCOP_d1llug2 (G:144-309)
2h: SCOP_d1lluh2 (H:144-309)
View:
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Classes
(
)
(
)
Folds
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)
(
)
Superfamilies
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)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
GroES-like
(132)
Superfamily
:
GroES-like
(130)
Family
:
Alcohol dehydrogenase-like, N-terminal domain
(114)
Protein domain
:
Alcohol dehydrogenase
(77)
Pseudomonas aeruginosa [TaxId: 287]
(1)
1a
d1llua1
A:2-143,A:310-342
1b
d1llub1
B:2-143,B:310-342
1c
d1lluc1
C:2-143,C:310-342
1d
d1llud1
D:2-143,D:310-342
1e
d1llue1
E:2-143,E:310-342
1f
d1lluf1
F:2-143,F:310-342
1g
d1llug1
G:2-143,G:310-342
1h
d1lluh1
H:2-143,H:310-342
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Alcohol dehydrogenase-like, C-terminal domain
(115)
Protein domain
:
Alcohol dehydrogenase
(77)
Pseudomonas aeruginosa [TaxId: 287]
(1)
2a
d1llua2
A:144-309
2b
d1llub2
B:144-309
2c
d1lluc2
C:144-309
2d
d1llud2
D:144-309
2e
d1llue2
E:144-309
2f
d1lluf2
F:144-309
2g
d1llug2
G:144-309
2h
d1lluh2
H:144-309
[
close SCOP info
]
CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_1lluA02 (A:154-291)
1b: CATH_1lluB02 (B:154-291)
1c: CATH_1lluC02 (C:154-291)
1d: CATH_1lluD02 (D:154-291)
1e: CATH_1lluE02 (E:154-291)
1f: CATH_1lluF02 (F:154-291)
1g: CATH_1lluG02 (G:154-291)
1h: CATH_1lluH02 (H:154-291)
2a: CATH_1lluA01 (A:2-153,A:292-342)
2b: CATH_1lluB01 (B:2-153,B:292-342)
2c: CATH_1lluC01 (C:2-153,C:292-342)
2d: CATH_1lluD01 (D:2-153,D:292-342)
2e: CATH_1lluE01 (E:2-153,E:292-342)
2f: CATH_1lluF01 (F:2-153,F:292-342)
2g: CATH_1lluG01 (G:2-153,G:292-342)
2h: CATH_1lluH01 (H:2-153,H:292-342)
View:
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Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Pseudomonas aeruginosa. Organism_taxid: 287. Strain: habs serotype i.
(1)
1a
1lluA02
A:154-291
1b
1lluB02
B:154-291
1c
1lluC02
C:154-291
1d
1lluD02
D:154-291
1e
1lluE02
E:154-291
1f
1lluF02
F:154-291
1g
1lluG02
G:154-291
1h
1lluH02
H:154-291
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Quinone Oxidoreductase; Chain A, domain 1
(131)
Homologous Superfamily
:
Medium-chain alcohol dehydrogenases, catalytic domain
(131)
Pseudomonas aeruginosa. Organism_taxid: 287. Strain: habs serotype i.
(1)
2a
1lluA01
A:2-153,A:292-342
2b
1lluB01
B:2-153,B:292-342
2c
1lluC01
C:2-153,C:292-342
2d
1lluD01
D:2-153,D:292-342
2e
1lluE01
E:2-153,E:292-342
2f
1lluF01
F:2-153,F:292-342
2g
1lluG01
G:2-153,G:292-342
2h
1lluH01
H:2-153,H:292-342
[
close CATH info
]
Pfam Domains
(2, 16)
Info
all PFAM domains
1a: PFAM_ADH_N_1lluH01 (H:31-140)
1b: PFAM_ADH_N_1lluH02 (H:31-140)
1c: PFAM_ADH_N_1lluH03 (H:31-140)
1d: PFAM_ADH_N_1lluH04 (H:31-140)
1e: PFAM_ADH_N_1lluH05 (H:31-140)
1f: PFAM_ADH_N_1lluH06 (H:31-140)
1g: PFAM_ADH_N_1lluH07 (H:31-140)
1h: PFAM_ADH_N_1lluH08 (H:31-140)
2a: PFAM_ADH_zinc_N_1lluH09 (H:181-307)
2b: PFAM_ADH_zinc_N_1lluH10 (H:181-307)
2c: PFAM_ADH_zinc_N_1lluH11 (H:181-307)
2d: PFAM_ADH_zinc_N_1lluH12 (H:181-307)
2e: PFAM_ADH_zinc_N_1lluH13 (H:181-307)
2f: PFAM_ADH_zinc_N_1lluH14 (H:181-307)
2g: PFAM_ADH_zinc_N_1lluH15 (H:181-307)
2h: PFAM_ADH_zinc_N_1lluH16 (H:181-307)
View:
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Clans
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)
Families
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(
)
Organisms
(
)
(
)
Clan
:
GroES
(70)
Family
:
ADH_N
(62)
Pseudomonas aeruginosa
(1)
1a
ADH_N-1lluH01
H:31-140
1b
ADH_N-1lluH02
H:31-140
1c
ADH_N-1lluH03
H:31-140
1d
ADH_N-1lluH04
H:31-140
1e
ADH_N-1lluH05
H:31-140
1f
ADH_N-1lluH06
H:31-140
1g
ADH_N-1lluH07
H:31-140
1h
ADH_N-1lluH08
H:31-140
Clan
:
NADP_Rossmann
(1239)
Family
:
ADH_zinc_N
(75)
Pseudomonas aeruginosa
(1)
2a
ADH_zinc_N-1lluH09
H:181-307
2b
ADH_zinc_N-1lluH10
H:181-307
2c
ADH_zinc_N-1lluH11
H:181-307
2d
ADH_zinc_N-1lluH12
H:181-307
2e
ADH_zinc_N-1lluH13
H:181-307
2f
ADH_zinc_N-1lluH14
H:181-307
2g
ADH_zinc_N-1lluH15
H:181-307
2h
ADH_zinc_N-1lluH16
H:181-307
[
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