PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
1LL6
Biol. Unit 1
Info
Asym.Unit (253 KB)
Biol.Unit 1 (66 KB)
Biol.Unit 2 (65 KB)
Biol.Unit 3 (65 KB)
Biol.Unit 4 (66 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF THE D169N MUTANT OF C. IMMITIS CHITINASE 1
Authors
:
K. Bortone, A. F. Monzingo, S. Ernst, J. D. Robertus
Date
:
26 Apr 02 (Deposition) - 18 Dec 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Beta-Alpha Barrel, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Bortone, A. F. Monzingo, S. Ernst, J. D. Robertus
The Structure Of An Allosamidin Complex With The Coccidioides Immitis Chitinase Defines A Role For A Second Acid Residue In Substrate-Assisted Mechanism
J. Mol. Biol. V. 320 293 2002
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_CHI1_COCPS_003 (N103K, chain A, )
2: VAR_CHI1_COCPS_004 (I109T, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_CHI1_COCPS_003
*
N
103
K
CHI1_COCPS
---
---
A
N
103
K
2
UniProt
VAR_CHI1_COCPS_004
*
I
109
T
CHI1_COCPS
---
---
A
I
109
T
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CHITINASE_18 (A:163-171)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CHITINASE_18
PS01095
Chitinases family 18 active site.
CHI1_COCP7
163-171
1
A:163-171
-
-
-
CHI1_COCPS
163-171
1
A:163-171
-
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1ll6a2 (A:293-354)
1b: SCOP_d1ll6b2 (B:293-354)
1c: SCOP_d1ll6c2 (C:293-354)
1d: SCOP_d1ll6d2 (D:293-354)
2a: SCOP_d1ll6a1 (A:36-292,A:355-427)
2b: SCOP_d1ll6b1 (B:36-292,B:355-427)
2c: SCOP_d1ll6c1 (C:36-292,C:355-427)
2d: SCOP_d1ll6d1 (D:36-292,D:355-427)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FKBP-like
(309)
Superfamily
:
Chitinase insertion domain
(107)
Family
:
Chitinase insertion domain
(107)
Protein domain
:
Chitinase 1
(18)
Fungus (Coccidioides immitis) [TaxId: 5501]
(4)
1a
d1ll6a2
A:293-354
1b
d1ll6b2
B:293-354
1c
d1ll6c2
C:293-354
1d
d1ll6d2
D:293-354
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Type II chitinase
(131)
Protein domain
:
Chitinase 1
(18)
Fungus (Coccidioides immitis) [TaxId: 5501]
(4)
2a
d1ll6a1
A:36-292,A:355-427
2b
d1ll6b1
B:36-292,B:355-427
2c
d1ll6c1
C:36-292,C:355-427
2d
d1ll6d1
D:36-292,D:355-427
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1ll6A01 (A:36-291,A:355-427)
1b: CATH_1ll6B01 (B:36-291,B:355-427)
1c: CATH_1ll6C01 (C:36-291,C:355-427)
1d: CATH_1ll6D01 (D:36-291,D:355-427)
2a: CATH_1ll6A02 (A:292-354)
2b: CATH_1ll6B02 (B:292-354)
2c: CATH_1ll6C02 (C:292-354)
2d: CATH_1ll6D02 (D:292-354)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Coccidioides immitis. Organism_taxid: 5501.
(3)
1a
1ll6A01
A:36-291,A:355-427
1b
1ll6B01
B:36-291,B:355-427
1c
1ll6C01
C:36-291,C:355-427
1d
1ll6D01
D:36-291,D:355-427
Architecture
:
Roll
(3276)
Topology
:
Chitinase A; domain 3
(225)
Homologous Superfamily
:
[code=3.10.50.10, no name defined]
(121)
Coccidioides immitis. Organism_taxid: 5501.
(3)
2a
1ll6A02
A:292-354
2b
1ll6B02
B:292-354
2c
1ll6C02
C:292-354
2d
1ll6D02
D:292-354
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_18_1ll6D01 (D:38-383)
1b: PFAM_Glyco_hydro_18_1ll6D02 (D:38-383)
1c: PFAM_Glyco_hydro_18_1ll6D03 (D:38-383)
1d: PFAM_Glyco_hydro_18_1ll6D04 (D:38-383)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Glyco_hydro_tim
(488)
Family
:
Glyco_hydro_18
(72)
Coccidioides posadasii (strain RMSCC 757 / Silveira) (Valley fever fungus)
(3)
1a
Glyco_hydro_18-1ll6D01
D:38-383
1b
Glyco_hydro_18-1ll6D02
D:38-383
1c
Glyco_hydro_18-1ll6D03
D:38-383
1d
Glyco_hydro_18-1ll6D04
D:38-383
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (253 KB)
Header - Asym.Unit
Biol.Unit 1 (66 KB)
Header - Biol.Unit 1
Biol.Unit 2 (65 KB)
Header - Biol.Unit 2
Biol.Unit 3 (65 KB)
Header - Biol.Unit 3
Biol.Unit 4 (66 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1LL6
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
