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1LL1
Asym. Unit
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Asym.Unit (105 KB)
Biol.Unit 1 (585 KB)
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(1)
Title
:
HYDROXO BRIDGE MET FORM HEMOCYANIN FROM LIMULUS
Authors
:
S. Liu, K. Magnus
Date
:
17 Mar 97 (Deposition) - 20 Aug 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A
Biol. Unit 1: A (6x)
Keywords
:
Oxygen Transport, Respiratory Protein, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Liu, H. Ton-That, K. Magnus
Crystallographic Studies Of Hydroxo, Nitrosyl, Azido And Fluro Met Form Hemocyanin Subunit Ii From Limulus
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
CU
2
Ligand/Ion
COPPER (II) ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: CU2 (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:324 , HIS A:328 , HIS A:364 , CU A:630 , HOH A:675 , HOH A:730
BINDING SITE FOR RESIDUE CU A 629
2
AC2
SOFTWARE
HIS A:173 , HIS A:177 , HIS A:204 , CU A:629 , HOH A:675 , HOH A:730
BINDING SITE FOR RESIDUE CU A 630
3
AC3
SOFTWARE
SER A:47 , ARG A:333 , SER A:349
BINDING SITE FOR RESIDUE CL A 631
4
CU2
UNKNOWN
HIS A:173 , HIS A:177 , HIS A:204 , HIS A:324 , HIS A:328 , HIS A:364
DESCRIPTION NOT PROVIDED
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: HEMOCYANIN_1 (A:162-181)
2: HEMOCYANIN_2 (A:353-361)
3: TYROSINASE_2 (A:357-368)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEMOCYANIN_1
PS00209
Arthropod hemocyanins / insect LSPs signature 1.
HCY2_LIMPO
162-181
1
A:162-181
2
HEMOCYANIN_2
PS00210
Arthropod hemocyanins / insect LSPs signature 2.
HCY2_LIMPO
353-361
1
A:353-361
3
TYROSINASE_2
PS00498
Tyrosinase and hemocyanins CuB-binding region signature.
HCY2_LIMPO
357-368
1
A:357-368
[
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]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d1ll1a2 (A:110-379)
2a: SCOP_d1ll1a1 (A:1-109)
3a: SCOP_d1ll1a3 (A:380-628)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Di-copper centre-containing domain
(47)
Superfamily
:
Di-copper centre-containing domain
(47)
Family
:
Hemocyanin middle domain
(8)
Protein domain
:
Arthropod hemocyanin
(6)
Horseshoe crab (Limulus polyphemus) [TaxId: 6850]
(4)
1a
d1ll1a2
A:110-379
Fold
:
Hemocyanin, N-terminal domain
(6)
Superfamily
:
Hemocyanin, N-terminal domain
(6)
Family
:
Hemocyanin, N-terminal domain
(6)
Protein domain
:
Hemocyanin, N-terminal domain
(6)
Horseshoe crab (Limulus polyphemus) [TaxId: 6850]
(4)
2a
d1ll1a1
A:1-109
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
Arthropod hemocyanin, C-terminal domain
(6)
Protein domain
:
Arthropod hemocyanin, C-terminal domain
(6)
Horseshoe crab (Limulus polyphemus) [TaxId: 6850]
(4)
3a
d1ll1a3
A:380-628
[
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]
CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1ll1A02 (A:110-131,A:151-377)
2a: CATH_1ll1A01 (A:1-109)
3a: CATH_1ll1A03 (A:143-147,A:378-628)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
di-copper center containing domain from catechol oxidase
(13)
Homologous Superfamily
:
Di-copper center containing domain from catechol oxidase
(13)
Atlantic horseshoe crab (Limulus polyphemus)
(4)
1a
1ll1A02
A:110-131,A:151-377
Architecture
:
Up-down Bundle
(3216)
Topology
:
Hemocyanin, N-terminal domain
(4)
Homologous Superfamily
:
Hemocyanin, N-terminal domain
(4)
Atlantic horseshoe crab (Limulus polyphemus)
(4)
2a
1ll1A01
A:1-109
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
E set domains
(6)
Atlantic horseshoe crab (Limulus polyphemus)
(4)
3a
1ll1A03
A:143-147,A:378-628
[
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_Hemocyanin_M_1ll1A01 (A:110-373)
2a: PFAM_Hemocyanin_C_1ll1A02 (A:379-627)
3a: PFAM_Hemocyanin_N_1ll1A03 (A:1-106)
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Clans
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(
)
(
)
Organisms
(
)
(
)
Clan
:
Di-copper
(13)
Family
:
Hemocyanin_M
(3)
Limulus polyphemus (Atlantic horseshoe crab)
(3)
1a
Hemocyanin_M-1ll1A01
A:110-373
Clan
:
no clan defined [family: Hemocyanin_C]
(3)
Family
:
Hemocyanin_C
(3)
Limulus polyphemus (Atlantic horseshoe crab)
(3)
2a
Hemocyanin_C-1ll1A02
A:379-627
Clan
:
no clan defined [family: Hemocyanin_N]
(3)
Family
:
Hemocyanin_N
(3)
Limulus polyphemus (Atlantic horseshoe crab)
(3)
3a
Hemocyanin_N-1ll1A03
A:1-106
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Chain A
Asymmetric Unit 1
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Asym.Unit (105 KB)
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