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Getting 'Exon' information from database.
1LJ5
Asym. Unit
Info
Asym.Unit (72 KB)
Biol.Unit 1 (69 KB)
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(1)
Title
:
1.8A RESOLUTION STRUCTURE OF LATENT PLASMINOGEN ACTIVATOR INHIBITOR-1(PAI-1)
Authors
:
P. E. Stein, K. Baek
Date
:
19 Apr 02 (Deposition) - 08 May 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Beta-Barrell, Blood Clotting
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 5)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
2a: DIMETHYL SULFOXIDE (DMSa)
2b: DIMETHYL SULFOXIDE (DMSb)
2c: DIMETHYL SULFOXIDE (DMSc)
2d: DIMETHYL SULFOXIDE (DMSd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
1
Ligand/Ion
ACETIC ACID
2
DMS
4
Ligand/Ion
DIMETHYL SULFOXIDE
[
close Hetero Component info
]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:85 , ASN A:365 , PRO A:366 , THR A:367 , GLY A:368 , HOH A:561
BINDING SITE FOR RESIDUE DMS A 401
2
AC2
SOFTWARE
THR A:177 , LYS A:207 , PHE A:208 , PRO A:227 , ARG A:268 , HOH A:502
BINDING SITE FOR RESIDUE DMS A 402
3
AC3
SOFTWARE
GLY A:155 , ALA A:156 , GLN A:319 , MET A:347 , ALA A:348 , HOH A:687
BINDING SITE FOR RESIDUE DMS A 403
4
AC4
SOFTWARE
GLU A:281 , THR A:282 , GLU A:283 , HOH A:592
BINDING SITE FOR RESIDUE DMS A 404
5
AC5
SOFTWARE
GLN A:204 , THR A:205 , HOH A:612
BINDING SITE FOR RESIDUE ACY A 501
[
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_013086 (H2P, chain A, )
2: VAR_013087 (R186H, chain A, )
3: VAR_013088 (T232N, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_013086
H
25
P
PAI1_HUMAN
Polymorphism
2227647
A
H
2
P
2
UniProt
VAR_013087
R
209
H
PAI1_HUMAN
Polymorphism
2227669
A
R
186
H
3
UniProt
VAR_013088
T
255
N
PAI1_HUMAN
Polymorphism
2227685
A
T
232
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SERPIN (A:352-362)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SERPIN
PS00284
Serpins signature.
PAI1_HUMAN
375-385
1
A:352-362
[
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]
Exons
(8, 8)
Info
All Exons
Exon 1.2b (A:1-68)
Exon 1.3b (A:68-146)
Exon 1.4 (A:146-211)
Exon 1.5a (A:211-277)
Exon 1.6 (A:277-311)
Exon 1.7 (A:311-340)
Exon 1.8 (A:340-368)
Exon 1.9a (A:368-379)
View:
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Label:
All Exon Boundaries
1: Boundary 1.1a/1.2b
2: Boundary 1.2b/1.3b
3: Boundary 1.3b/1.4
4: Boundary 1.4/1.5a
5: Boundary 1.5a/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8
8: Boundary 1.8/1.9a
9: Boundary 1.9a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000223095
1a
ENSE00001714420
chr7:
100770370-100770525
156
PAI1_HUMAN
-
0
0
-
-
1.2b
ENST00000223095
2b
ENSE00000881563
chr7:
100771674-100771945
272
PAI1_HUMAN
1-91
91
1
A:1-68
68
1.3b
ENST00000223095
3b
ENSE00000712140
chr7:
100773702-100773935
234
PAI1_HUMAN
91-169
79
1
A:68-146
79
1.4
ENST00000223095
4
ENSE00000712144
chr7:
100775156-100775350
195
PAI1_HUMAN
169-234
66
1
A:146-211
66
1.5a
ENST00000223095
5a
ENSE00000712149
chr7:
100776976-100777174
199
PAI1_HUMAN
234-300
67
1
A:211-277
67
1.6
ENST00000223095
6
ENSE00000712153
chr7:
100778775-100778875
101
PAI1_HUMAN
300-334
35
1
A:277-311
35
1.7
ENST00000223095
7
ENSE00000712158
chr7:
100778996-100779082
87
PAI1_HUMAN
334-363
30
1
A:311-340
30
1.8
ENST00000223095
8
ENSE00000712164
chr7:
100780282-100780365
84
PAI1_HUMAN
363-391
29
1
A:340-368
29
1.9a
ENST00000223095
9a
ENSE00001055519
chr7:
100780686-100782547
1862
PAI1_HUMAN
391-402
12
1
A:368-379
12
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1lj5a_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Serpins
(120)
Superfamily
:
Serpins
(120)
Family
:
Serpins
(100)
Protein domain
:
Plasminogen activator inhibitor-1
(16)
Human (Homo sapiens) [TaxId: 9606]
(14)
1a
d1lj5a_
A:
[
close SCOP info
]
CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1lj5A01 (A:1-170,A:281-325,A:336-345)
2a: CATH_1lj5A02 (A:171-280,A:326-335,A:346-379)
View:
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)
(
)
Architectures
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)
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Antithrombin; Chain I, domain 2
(100)
Homologous Superfamily
:
Antithrombin, subunit I, domain 2
(100)
Human (Homo sapiens)
(80)
1a
1lj5A01
A:1-170,A:281-325,A:336-345
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Alpha-1-antitrypsin; domain 1
(101)
Homologous Superfamily
:
Alpha-1-antitrypsin, domain 1
(101)
Human (Homo sapiens)
(81)
2a
1lj5A02
A:171-280,A:326-335,A:346-379
[
close CATH info
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Serpin_1lj5A01 (A:10-379)
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Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Serpin]
(63)
Family
:
Serpin
(63)
Homo sapiens (Human)
(41)
1a
Serpin-1lj5A01
A:10-379
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close Pfam info
]
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Chain A
Asymmetric Unit 1
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