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1LHV
Biol. Unit 1
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Asym.Unit (37 KB)
Biol.Unit 1 (61 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE N-TERMINAL LG-DOMAIN OF SHBG IN COMPLEX WITH NORGESTREL
Authors
:
I. Grishkovskaya, G. V. Avvakumov, G. L. Hammond, M. G. Catalano, Y. A. Muller
Date
:
17 Apr 02 (Deposition) - 23 Oct 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Shbg, Norgestrel, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Grishkovskaya, G. V. Avvakumov, G. L. Hammond, M. G. Catalano, Y. A. Muller
Steroid Ligands Bind Human Sex Hormone-Binding Globulin In Specific Orientations And Produce Distinct Changes In Protein Conformation
J. Biol. Chem. V. 277 32086 2002
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: ISOPROPYL ALCOHOL (IPAa)
3a: 13-BETA-ETHYL-17-ALPHA-ETHYNYL-17-... (NOGa)
4a: ZINC ION (ZNa)
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No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
IPA
2
Ligand/Ion
ISOPROPYL ALCOHOL
3
NOG
2
Ligand/Ion
13-BETA-ETHYL-17-ALPHA-ETHYNYL-17-BETA-HYDROXYGON-4-EN-3-ONE
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:50 , GLU A:52 , ALA A:160 , HOH A:512 , HOH A:535
BINDING SITE FOR RESIDUE CA A 401
2
AC2
SOFTWARE
ASP A:65 , HIS A:83 , HIS A:136 , HOH A:523
BINDING SITE FOR RESIDUE ZN A 501
3
AC3
SOFTWARE
THR A:40 , SER A:41 , SER A:42 , THR A:60 , ASP A:65 , ASN A:82 , VAL A:105 , MET A:107 , MET A:139 , LEU A:171
BINDING SITE FOR RESIDUE NOG A 301
4
AC4
SOFTWARE
GLU A:104 , LYS A:106 , GLU A:115 , GLY A:118
BINDING SITE FOR RESIDUE IPA A 502
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_016182 (P156L, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_016182
P
185
L
SHBG_HUMAN
Polymorphism
6258
A
P
156
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: LAM_G_DOMAIN (A:16-188)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LAM_G_DOMAIN
PS50025
Laminin G domain profile.
SHBG_HUMAN
45-217
2
A:16-188
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Exons
(0, 0)
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1lhva_ (A:)
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(
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Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Laminin G-like module
(37)
Protein domain
:
Sex hormone-binding globulin
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d1lhva_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1lhvA00 (A:13-189)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Human (Homo sapiens)
(49)
1a
1lhvA00
A:13-189
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Laminin_G_1_1lhvA01 (A:46-176)
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Clan
:
Concanavalin
(293)
Family
:
Laminin_G_1
(15)
Homo sapiens (Human)
(7)
1a
Laminin_G_1-1lhvA01
A:46-176
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Asym.Unit (37 KB)
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