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1LHN
Asym. Unit
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Asym.Unit (38 KB)
Biol.Unit 1 (63 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE N-TERMINAL LG-DOMAIN OF SHBG IN COMPLEX WITH 5ALPHA-ANDROSTANE-3BETA,17ALPHA-DIOL
Authors
:
I. Grishkovskaya, G. V. Avvakumov, G. L. Hammond, M. G. Catalano, Y. A. Muller
Date
:
17 Apr 02 (Deposition) - 23 Oct 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Shbg, 17A-Dha, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Grishkovskaya, G. V. Avvakumov, G. L. Hammond, M. G. Catalano, Y. A. Muller
Steroid Ligands Bind Human Sex Hormone-Binding Globulin In Specific Orientations And Produce Distinct Changes In Protein Conformation
J. Biol. Chem. V. 277 32086 2002
(for further references see the
PDB file header
)
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: 5-ALPHA-ANDROSTANE-3-BETA,17-ALPHA... (AONa)
2a: CALCIUM ION (CAa)
3a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AON
1
Ligand/Ion
5-ALPHA-ANDROSTANE-3-BETA,17-ALPHA-DIOL
2
CA
1
Ligand/Ion
CALCIUM ION
3
ZN
1
Ligand/Ion
ZINC ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:50 , GLU A:52 , ALA A:160 , HOH A:506 , HOH A:511 , HOH A:524
BINDING SITE FOR RESIDUE CA A 401
2
AC2
SOFTWARE
ASP A:65 , HIS A:83 , HIS A:136 , HOH A:537
BINDING SITE FOR RESIDUE ZN A 501
3
AC3
SOFTWARE
THR A:40 , SER A:41 , SER A:42 , ASP A:65 , TRP A:66 , PHE A:67 , VAL A:105 , MET A:107 , HOH A:549
BINDING SITE FOR RESIDUE AON A 301
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_016182 (P156L, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_016182
P
185
L
SHBG_HUMAN
Polymorphism
6258
A
P
156
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: LAM_G_DOMAIN (A:16-188)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LAM_G_DOMAIN
PS50025
Laminin G domain profile.
SHBG_HUMAN
45-217
1
A:16-188
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Exons
(4, 4)
Info
All Exons
Exon 1.3 (A:13-39)
Exon 1.4 (A:39-102)
Exon 1.5 (A:103-156 (gaps))
Exon 1.6 (A:157-189)
View:
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All Exon Boundaries
1: Boundary 1.2b/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6
5: Boundary 1.6/1.7
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000380450
2b
ENSE00001943779
chr17:
7533468-7533601
134
SHBG_HUMAN
1-37
37
0
-
-
1.3
ENST00000380450
3
ENSE00001650558
chr17:
7533734-7533825
92
SHBG_HUMAN
38-68
31
1
A:13-39
27
1.4
ENST00000380450
4
ENSE00000887379
chr17:
7533998-7534187
190
SHBG_HUMAN
68-131
64
1
A:39-102
64
1.5
ENST00000380450
5
ENSE00000887381
chr17:
7534518-7534679
162
SHBG_HUMAN
132-185
54
1
A:103-156 (gaps)
54
1.6
ENST00000380450
6
ENSE00000887383
chr17:
7534907-7535066
160
SHBG_HUMAN
186-239
54
1
A:157-189
33
1.7
ENST00000380450
7
ENSE00000887385
chr17:
7535197-7535333
137
SHBG_HUMAN
239-284
46
0
-
-
1.8
ENST00000380450
8
ENSE00000887386
chr17:
7536070-7536277
208
SHBG_HUMAN
285-354
70
0
-
-
1.9b
ENST00000380450
9b
ENSE00001828732
chr17:
7536522-7536701
180
SHBG_HUMAN
354-402
49
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1lhna_ (A:)
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(
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Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Laminin G-like module
(37)
Protein domain
:
Sex hormone-binding globulin
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d1lhna_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1lhnA00 (A:13-189)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Human (Homo sapiens)
(49)
1a
1lhnA00
A:13-189
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Laminin_G_1_1lhnA01 (A:46-176)
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Clan
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Concanavalin
(293)
Family
:
Laminin_G_1
(15)
Homo sapiens (Human)
(7)
1a
Laminin_G_1-1lhnA01
A:46-176
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Asymmetric Unit 1
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