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1LGR
Asym. Unit
Info
Asym.Unit (778 KB)
Biol.Unit 1 (770 KB)
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(1)
Title
:
INTERACTIONS OF NUCLEOTIDES WITH FULLY UNADENYLYLATED GLUTAMINE SYNTHETASE FROM SALMONELLA TYPHIMURIUM
Authors
:
S. -H. Liaw, D. Eisenberg
Date
:
05 Aug 94 (Deposition) - 30 Nov 94 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.79
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Ligase(Amide Synthetase)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. H. Liaw, G. Jun, D. Eisenberg
Interactions Of Nucleotides With Fully Unadenylylated Glutamine Synthetase From Salmonella Typhimurium.
Biochemistry V. 33 11184 1994
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 36)
Info
All Hetero Components
1a: ADENOSINE MONOPHOSPHATE (AMPa)
1b: ADENOSINE MONOPHOSPHATE (AMPb)
1c: ADENOSINE MONOPHOSPHATE (AMPc)
1d: ADENOSINE MONOPHOSPHATE (AMPd)
1e: ADENOSINE MONOPHOSPHATE (AMPe)
1f: ADENOSINE MONOPHOSPHATE (AMPf)
1g: ADENOSINE MONOPHOSPHATE (AMPg)
1h: ADENOSINE MONOPHOSPHATE (AMPh)
1i: ADENOSINE MONOPHOSPHATE (AMPi)
1j: ADENOSINE MONOPHOSPHATE (AMPj)
1k: ADENOSINE MONOPHOSPHATE (AMPk)
1l: ADENOSINE MONOPHOSPHATE (AMPl)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
2e: MANGANESE (II) ION (MNe)
2f: MANGANESE (II) ION (MNf)
2g: MANGANESE (II) ION (MNg)
2h: MANGANESE (II) ION (MNh)
2i: MANGANESE (II) ION (MNi)
2j: MANGANESE (II) ION (MNj)
2k: MANGANESE (II) ION (MNk)
2l: MANGANESE (II) ION (MNl)
2m: MANGANESE (II) ION (MNm)
2n: MANGANESE (II) ION (MNn)
2o: MANGANESE (II) ION (MNo)
2p: MANGANESE (II) ION (MNp)
2q: MANGANESE (II) ION (MNq)
2r: MANGANESE (II) ION (MNr)
2s: MANGANESE (II) ION (MNs)
2t: MANGANESE (II) ION (MNt)
2u: MANGANESE (II) ION (MNu)
2v: MANGANESE (II) ION (MNv)
2w: MANGANESE (II) ION (MNw)
2x: MANGANESE (II) ION (MNx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AMP
12
Ligand/Ion
ADENOSINE MONOPHOSPHATE
2
MN
24
Ligand/Ion
MANGANESE (II) ION
[
close Hetero Component info
]
Sites
(48, 48)
Info
All Sites
01: A (AUTHOR)
02: AC1 (SOFTWARE)
03: AC2 (SOFTWARE)
04: AC3 (SOFTWARE)
05: AC4 (SOFTWARE)
06: AC5 (SOFTWARE)
07: AC6 (SOFTWARE)
08: AC7 (SOFTWARE)
09: AC8 (SOFTWARE)
10: AC9 (SOFTWARE)
11: B (AUTHOR)
12: BC1 (SOFTWARE)
13: BC2 (SOFTWARE)
14: BC3 (SOFTWARE)
15: BC4 (SOFTWARE)
16: BC5 (SOFTWARE)
17: BC6 (SOFTWARE)
18: BC7 (SOFTWARE)
19: BC8 (SOFTWARE)
20: BC9 (SOFTWARE)
21: C (AUTHOR)
22: CC1 (SOFTWARE)
23: CC2 (SOFTWARE)
24: CC3 (SOFTWARE)
25: CC4 (SOFTWARE)
26: CC5 (SOFTWARE)
27: CC6 (SOFTWARE)
28: CC7 (SOFTWARE)
29: CC8 (SOFTWARE)
30: CC9 (SOFTWARE)
31: D (AUTHOR)
32: DC1 (SOFTWARE)
33: DC2 (SOFTWARE)
34: DC3 (SOFTWARE)
35: DC4 (SOFTWARE)
36: DC5 (SOFTWARE)
37: DC6 (SOFTWARE)
38: DC7 (SOFTWARE)
39: DC8 (SOFTWARE)
40: DC9 (SOFTWARE)
41: E (AUTHOR)
42: F (AUTHOR)
43: G (AUTHOR)
44: H (AUTHOR)
45: I (AUTHOR)
46: J (AUTHOR)
47: K (AUTHOR)
48: L (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
A
AUTHOR
GLU A:129 , GLU A:131 , HIS A:269 , GLU A:212 , GLU A:220 , GLU A:357 , ARG A:321 , GLY A:265 , ARG A:339 , ARG A:359 , ASP A:50 , AMP A:471 , MN A:469 , MN A:470
CATALYTIC SITE IN CHAIN A
02
AC1
SOFTWARE
GLU A:131 , GLU A:212 , GLU A:220
BINDING SITE FOR RESIDUE MN A 469
03
AC2
SOFTWARE
GLU A:129 , HIS A:269 , GLU A:357
BINDING SITE FOR RESIDUE MN A 470
04
AC3
SOFTWARE
GLU B:131 , GLU B:212 , GLU B:220
BINDING SITE FOR RESIDUE MN B 483
05
AC4
SOFTWARE
GLU B:129 , HIS B:269 , GLU B:357
BINDING SITE FOR RESIDUE MN B 484
06
AC5
SOFTWARE
GLU C:131 , GLU C:212 , GLU C:220
BINDING SITE FOR RESIDUE MN C 485
07
AC6
SOFTWARE
GLU C:129 , HIS C:269 , GLU C:357
BINDING SITE FOR RESIDUE MN C 486
08
AC7
SOFTWARE
GLU D:131 , GLU D:212 , GLU D:220
BINDING SITE FOR RESIDUE MN D 487
09
AC8
SOFTWARE
GLU D:129 , HIS D:269 , GLU D:357
BINDING SITE FOR RESIDUE MN D 488
10
AC9
SOFTWARE
GLU E:131 , GLU E:212 , GLU E:220
BINDING SITE FOR RESIDUE MN E 489
11
B
AUTHOR
GLU B:129 , GLU B:131 , HIS B:269 , GLU B:212 , GLU B:220 , GLU B:357 , ARG B:321 , GLY B:265 , ARG B:339 , ARG B:359 , ASP B:50 , AMP B:472 , MN B:483 , MN B:484
CATALYTIC SITE IN CHAIN B
12
BC1
SOFTWARE
GLU E:129 , HIS E:269 , GLU E:357
BINDING SITE FOR RESIDUE MN E 490
13
BC2
SOFTWARE
GLU F:131 , GLU F:212 , GLU F:220
BINDING SITE FOR RESIDUE MN F 491
14
BC3
SOFTWARE
GLU F:129 , HIS F:269 , GLU F:357
BINDING SITE FOR RESIDUE MN F 492
15
BC4
SOFTWARE
GLU G:131 , GLU G:212 , GLU G:220
BINDING SITE FOR RESIDUE MN G 493
16
BC5
SOFTWARE
GLU G:129 , HIS G:269 , GLU G:357
BINDING SITE FOR RESIDUE MN G 494
17
BC6
SOFTWARE
GLU H:131 , GLU H:212 , GLU H:220
BINDING SITE FOR RESIDUE MN H 495
18
BC7
SOFTWARE
GLU H:129 , HIS H:269 , GLU H:357
BINDING SITE FOR RESIDUE MN H 496
19
BC8
SOFTWARE
GLU I:131 , GLU I:212 , GLU I:220
BINDING SITE FOR RESIDUE MN I 497
20
BC9
SOFTWARE
GLU I:129 , HIS I:269 , GLU I:357
BINDING SITE FOR RESIDUE MN I 498
21
C
AUTHOR
GLU C:129 , GLU C:131 , HIS C:269 , GLU C:212 , GLU C:220 , GLU C:357 , ARG C:321 , GLY C:265 , ARG C:339 , ARG C:359 , ASP C:50 , AMP C:473 , MN C:485 , MN C:486
CATALYTIC SITE IN CHAIN C
22
CC1
SOFTWARE
GLU J:131 , GLU J:212 , GLU J:220
BINDING SITE FOR RESIDUE MN J 499
23
CC2
SOFTWARE
GLU J:129 , HIS J:269 , GLU J:357
BINDING SITE FOR RESIDUE MN J 500
24
CC3
SOFTWARE
GLU K:131 , GLU K:212 , GLU K:220
BINDING SITE FOR RESIDUE MN K 501
25
CC4
SOFTWARE
GLU K:129 , HIS K:269 , GLU K:357
BINDING SITE FOR RESIDUE MN K 502
26
CC5
SOFTWARE
GLU L:131 , GLU L:212 , GLU L:220
BINDING SITE FOR RESIDUE MN L 503
27
CC6
SOFTWARE
GLU L:129 , HIS L:269 , GLU L:357
BINDING SITE FOR RESIDUE MN L 504
28
CC7
SOFTWARE
LEU A:125 , GLY A:127 , GLU A:207 , THR A:223 , PHE A:225 , HIS A:271 , SER A:273 , ARG A:355
BINDING SITE FOR RESIDUE AMP A 471
29
CC8
SOFTWARE
LEU B:125 , GLY B:127 , GLU B:207 , THR B:223 , PHE B:225 , HIS B:271 , SER B:273 , ARG B:355
BINDING SITE FOR RESIDUE AMP B 472
30
CC9
SOFTWARE
LEU C:125 , GLY C:127 , GLU C:207 , THR C:223 , PHE C:225 , HIS C:271 , SER C:273 , ARG C:355
BINDING SITE FOR RESIDUE AMP C 473
31
D
AUTHOR
GLU D:129 , GLU D:131 , HIS D:269 , GLU D:212 , GLU D:220 , GLU D:357 , ARG D:321 , GLY D:265 , ARG D:339 , ARG D:359 , ASP D:50 , AMP D:474 , MN D:487 , MN D:488
CATALYTIC SITE IN CHAIN D
32
DC1
SOFTWARE
LEU D:125 , GLY D:127 , GLU D:207 , THR D:223 , PHE D:225 , HIS D:271 , SER D:273 , ARG D:355
BINDING SITE FOR RESIDUE AMP D 474
33
DC2
SOFTWARE
LEU E:125 , GLY E:127 , GLU E:207 , THR E:223 , PHE E:225 , HIS E:271 , SER E:273 , ARG E:355
BINDING SITE FOR RESIDUE AMP E 475
34
DC3
SOFTWARE
LEU F:125 , GLY F:127 , GLU F:207 , THR F:223 , PHE F:225 , HIS F:271 , SER F:273 , ARG F:355
BINDING SITE FOR RESIDUE AMP F 476
35
DC4
SOFTWARE
LEU G:125 , GLY G:127 , GLU G:207 , THR G:223 , PHE G:225 , HIS G:271 , SER G:273 , ARG G:355
BINDING SITE FOR RESIDUE AMP G 477
36
DC5
SOFTWARE
LEU H:125 , GLY H:127 , GLU H:207 , THR H:223 , PHE H:225 , HIS H:271 , SER H:273 , ARG H:355
BINDING SITE FOR RESIDUE AMP H 478
37
DC6
SOFTWARE
LEU I:125 , GLY I:127 , GLU I:207 , THR I:223 , PHE I:225 , HIS I:271 , SER I:273 , ARG I:355
BINDING SITE FOR RESIDUE AMP I 479
38
DC7
SOFTWARE
LEU J:125 , GLY J:127 , GLU J:207 , THR J:223 , PHE J:225 , HIS J:271 , SER J:273 , ARG J:355
BINDING SITE FOR RESIDUE AMP J 480
39
DC8
SOFTWARE
LEU K:125 , GLY K:127 , GLU K:207 , THR K:223 , PHE K:225 , HIS K:271 , SER K:273 , ARG K:355
BINDING SITE FOR RESIDUE AMP K 481
40
DC9
SOFTWARE
LEU L:125 , GLY L:127 , GLU L:207 , THR L:223 , PHE L:225 , HIS L:271 , SER L:273 , ARG L:355
BINDING SITE FOR RESIDUE AMP L 482
41
E
AUTHOR
GLU E:129 , GLU E:131 , HIS E:269 , GLU E:212 , GLU E:220 , GLU E:357 , ARG E:321 , GLY E:265 , ARG E:339 , ARG E:359 , ASP E:50 , AMP E:475 , MN E:489 , MN E:490
CATALYTIC SITE IN CHAIN E
42
F
AUTHOR
GLU F:129 , GLU F:131 , HIS F:269 , GLU F:212 , GLU F:220 , GLU F:357 , ARG F:321 , GLY F:265 , ARG F:339 , ARG F:359 , ASP F:50 , AMP F:476 , MN F:491 , MN F:492
CATALYTIC SITE IN CHAIN F
43
G
AUTHOR
GLU G:129 , GLU G:131 , HIS G:269 , GLU G:212 , GLU G:220 , GLU G:357 , ARG G:321 , GLY G:265 , ARG G:339 , ARG G:359 , ASP G:50 , AMP G:477 , MN G:493 , MN G:494
CATALYTIC SITE IN CHAIN G
44
H
AUTHOR
GLU H:129 , GLU H:131 , HIS H:269 , GLU H:212 , GLU H:220 , GLU H:357 , ARG H:321 , GLY H:265 , ARG H:339 , ARG H:359 , ASP H:50 , AMP H:478 , MN H:495 , MN H:496
CATALYTIC SITE IN CHAIN H
45
I
AUTHOR
GLU I:129 , GLU I:131 , HIS I:269 , GLU I:212 , GLU I:220 , GLU I:357 , ARG I:321 , GLY I:265 , ARG I:339 , ARG I:359 , ASP I:50 , AMP I:479 , MN I:497 , MN I:498
CATALYTIC SITE IN CHAIN I
46
J
AUTHOR
GLU J:129 , GLU J:131 , HIS J:269 , GLU J:212 , GLU J:220 , GLU J:357 , ARG J:321 , GLY J:265 , ARG J:339 , ARG J:359 , ASP J:50 , AMP J:480 , MN J:499 , MN J:500
CATALYTIC SITE IN CHAIN J
47
K
AUTHOR
GLU K:129 , GLU K:131 , HIS K:269 , GLU K:212 , GLU K:220 , GLU K:357 , ARG K:321 , GLY K:265 , ARG K:339 , ARG K:359 , ASP K:50 , AMP K:481 , MN K:501 , MN K:502
CATALYTIC SITE IN CHAIN K
48
L
AUTHOR
GLU L:129 , GLU L:131 , HIS L:269 , GLU L:212 , GLU L:220 , GLU L:357 , ARG L:321 , GLY L:265 , ARG L:339 , ARG L:359 , ASP L:50 , AMP L:482 , MN L:503 , MN L:504
CATALYTIC SITE IN CHAIN L
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 36)
Info
All PROSITE Patterns/Profiles
1: GLNA_1 (A:49-67,B:49-67,C:49-67,D:49-67,E:...)
2: GLNA_ATP (A:258-273,B:258-273,C:258-273,D:25...)
3: GLNA_ADENYLATION (A:385-393,B:385-393,C:385-393,D:38...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLNA_1
PS00180
Glutamine synthetase signature 1.
GLN1B_SALTI
50-68
12
A:49-67
B:49-67
C:49-67
D:49-67
E:49-67
F:49-67
G:49-67
H:49-67
I:49-67
J:49-67
K:49-67
L:49-67
GLN1B_SALTY
50-68
12
A:49-67
B:49-67
C:49-67
D:49-67
E:49-67
F:49-67
G:49-67
H:49-67
I:49-67
J:49-67
K:49-67
L:49-67
2
GLNA_ATP
PS00181
Glutamine synthetase putative ATP-binding region signature.
GLN1B_SALTI
259-274
12
A:258-273
B:258-273
C:258-273
D:258-273
E:258-273
F:258-273
G:258-273
H:258-273
I:258-273
J:258-273
K:258-273
L:258-273
GLN1B_SALTY
259-274
12
A:258-273
B:258-273
C:258-273
D:258-273
E:258-273
F:258-273
G:258-273
H:258-273
I:258-273
J:258-273
K:258-273
L:258-273
3
GLNA_ADENYLATION
PS00182
Glutamine synthetase class-I adenylation site.
GLN1B_SALTI
386-398
12
A:385-393
B:385-393
C:385-393
D:385-393
E:385-393
F:385-393
G:385-393
H:385-393
I:385-393
J:385-393
K:385-393
L:385-393
GLN1B_SALTY
386-398
12
A:385-393
B:385-393
C:385-393
D:385-393
E:385-393
F:385-393
G:385-393
H:385-393
I:385-393
J:385-393
K:385-393
L:385-393
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 24)
Info
All SCOP Domains
1a: SCOP_d1lgra1 (A:1-100)
1b: SCOP_d1lgrb1 (B:1-100)
1c: SCOP_d1lgrc1 (C:1-100)
1d: SCOP_d1lgrd1 (D:1-100)
1e: SCOP_d1lgre1 (E:1-100)
1f: SCOP_d1lgrf1 (F:1-100)
1g: SCOP_d1lgrg1 (G:1-100)
1h: SCOP_d1lgrh1 (H:1-100)
1i: SCOP_d1lgri1 (I:1-100)
1j: SCOP_d1lgrj1 (J:1-100)
1k: SCOP_d1lgrk1 (K:1-100)
1l: SCOP_d1lgrl1 (L:1-100)
2a: SCOP_d1lgra2 (A:101-468)
2b: SCOP_d1lgrb2 (B:101-468)
2c: SCOP_d1lgrc2 (C:101-468)
2d: SCOP_d1lgrd2 (D:101-468)
2e: SCOP_d1lgre2 (E:101-468)
2f: SCOP_d1lgrf2 (F:101-468)
2g: SCOP_d1lgrg2 (G:101-468)
2h: SCOP_d1lgrh2 (H:101-468)
2i: SCOP_d1lgri2 (I:101-468)
2j: SCOP_d1lgrj2 (J:101-468)
2k: SCOP_d1lgrk2 (K:101-468)
2l: SCOP_d1lgrl2 (L:101-468)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Glutamine synthetase, N-terminal domain
(20)
Family
:
Glutamine synthetase, N-terminal domain
(8)
Protein domain
:
Glutamine synthetase, N-terminal domain
(8)
Salmonella typhimurium [TaxId: 90371]
(6)
1a
d1lgra1
A:1-100
1b
d1lgrb1
B:1-100
1c
d1lgrc1
C:1-100
1d
d1lgrd1
D:1-100
1e
d1lgre1
E:1-100
1f
d1lgrf1
F:1-100
1g
d1lgrg1
G:1-100
1h
d1lgrh1
H:1-100
1i
d1lgri1
I:1-100
1j
d1lgrj1
J:1-100
1k
d1lgrk1
K:1-100
1l
d1lgrl1
L:1-100
Fold
:
Glutamine synthetase/guanido kinase
(68)
Superfamily
:
Glutamine synthetase/guanido kinase
(68)
Family
:
Glutamine synthetase catalytic domain
(8)
Protein domain
:
Glutamine synthetase, C-terminal domain
(8)
Salmonella typhimurium [TaxId: 90371]
(6)
2a
d1lgra2
A:101-468
2b
d1lgrb2
B:101-468
2c
d1lgrc2
C:101-468
2d
d1lgrd2
D:101-468
2e
d1lgre2
E:101-468
2f
d1lgrf2
F:101-468
2g
d1lgrg2
G:101-468
2h
d1lgrh2
H:101-468
2i
d1lgri2
I:101-468
2j
d1lgrj2
J:101-468
2k
d1lgrk2
K:101-468
2l
d1lgrl2
L:101-468
[
close SCOP info
]
CATH Domains
(2, 24)
Info
all CATH domains
1a: CATH_1lgrA01 (A:104-456)
1b: CATH_1lgrB02 (B:104-456)
1c: CATH_1lgrK02 (K:104-456)
1d: CATH_1lgrL02 (L:104-456)
1e: CATH_1lgrC02 (C:104-456)
1f: CATH_1lgrD02 (D:104-456)
1g: CATH_1lgrE02 (E:104-456)
1h: CATH_1lgrF02 (F:104-456)
1i: CATH_1lgrG02 (G:104-456)
1j: CATH_1lgrH02 (H:104-456)
1k: CATH_1lgrI02 (I:104-456)
1l: CATH_1lgrJ02 (J:104-456)
2a: CATH_1lgrA02 (A:1-103)
2b: CATH_1lgrB01 (B:1-103)
2c: CATH_1lgrK01 (K:1-103)
2d: CATH_1lgrL01 (L:1-103)
2e: CATH_1lgrC01 (C:1-103)
2f: CATH_1lgrD01 (D:1-103)
2g: CATH_1lgrE01 (E:1-103)
2h: CATH_1lgrF01 (F:1-103)
2i: CATH_1lgrG01 (G:1-103)
2j: CATH_1lgrH01 (H:1-103)
2k: CATH_1lgrI01 (I:1-103)
2l: CATH_1lgrJ01 (J:1-103)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Creatine Kinase; Chain A, domain 2
(27)
Homologous Superfamily
:
Creatine Kinase; Chain
(27)
Salmonella typhimurium. Organism_taxid: 602
(3)
1a
1lgrA01
A:104-456
1b
1lgrB02
B:104-456
1c
1lgrK02
K:104-456
1d
1lgrL02
L:104-456
1e
1lgrC02
C:104-456
1f
1lgrD02
D:104-456
1g
1lgrE02
E:104-456
1h
1lgrF02
F:104-456
1i
1lgrG02
G:104-456
1j
1lgrH02
H:104-456
1k
1lgrI02
I:104-456
1l
1lgrJ02
J:104-456
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
[code=3.10.20.70, no name defined]
(11)
Salmonella typhimurium. Organism_taxid: 602
(3)
2a
1lgrA02
A:1-103
2b
1lgrB01
B:1-103
2c
1lgrK01
K:1-103
2d
1lgrL01
L:1-103
2e
1lgrC01
C:1-103
2f
1lgrD01
D:1-103
2g
1lgrE01
E:1-103
2h
1lgrF01
F:1-103
2i
1lgrG01
G:1-103
2j
1lgrH01
H:1-103
2k
1lgrI01
I:1-103
2l
1lgrJ01
J:1-103
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