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1LE9
Biol. Unit 1
Info
Asym.Unit (215 KB)
Biol.Unit 1 (106 KB)
Biol.Unit 2 (106 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A NF-KB HETERODIMER BOUND TO THE IG/HIV-KB SITI
Authors
:
B. Benjamin, D. B. Huang, F. E. Chen-Park, P. B. Sigler, G. Ghosh
Date
:
09 Apr 02 (Deposition) - 15 Apr 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Transcription Factor, Nf-Kb/Dna Complex, Crystal Structure, Transcription/Dna Complex
(Keyword Search:
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Reference
:
B. Berkowitz, D. B. Huang, F. E. Chen-Park, P. B. Sigler, G. Ghosh
The X-Ray Crystal Structure Of The Nf-Kappa B P50. P65 Heterodimer Bound To The Interferon Beta -Kappa B Site.
J. Biol. Chem. V. 277 24694 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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PROSITE Patterns/Profiles
(1, 2)
Info
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1: REL_1 (A:34-40)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
REL_1
PS01204
NF-kappa-B/Rel/dorsal domain signature.
TF65_MOUSE
34-40
1
A:34-40
-
NFKB1_MOUSE
55-61
1
B:55-61
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d1le9b2 (B:39-250)
1b: SCOP_d1le9f2 (F:39-250)
2a: SCOP_d1le9a2 (A:19-191)
2b: SCOP_d1le9e2 (E:19-191)
3a: SCOP_d1le9b1 (B:251-350)
3b: SCOP_d1le9f1 (F:251-350)
4a: SCOP_d1le9a1 (A:192-291)
4b: SCOP_d1le9e1 (E:192-291)
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Protein Domains
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
p53-like transcription factors
(153)
Family
:
Rel/Dorsal transcription factors, DNA-binding domain
(34)
Protein domain
:
p50 subunit of NF-kappa B (NFKB), N-terminal domain
(9)
Mouse (Mus musculus) [TaxId: 10090]
(7)
1a
d1le9b2
B:39-250
1b
d1le9f2
F:39-250
Protein domain
:
p65 subunit of NF-kappa B (NFKB), N-terminal domain
(10)
Mouse (Mus musculus) [TaxId: 10090]
(8)
2a
d1le9a2
A:19-191
2b
d1le9e2
E:19-191
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
(56)
Protein domain
:
p50 subunit of NF-kappa B transcription factor
(18)
Mouse (Mus musculus) [TaxId: 10090]
(15)
3a
d1le9b1
B:251-350
3b
d1le9f1
F:251-350
Protein domain
:
p65 subunit of NF-kappa B (NFKB), dimerization domain
(15)
Mouse (Mus musculus) [TaxId: 10090]
(13)
4a
d1le9a1
A:192-291
4b
d1le9e1
E:192-291
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1le9A01 (A:19-187)
1b: CATH_1le9E01 (E:19-187)
1c: CATH_1le9B01 (B:39-241)
1d: CATH_1le9F01 (F:39-241)
2a: CATH_1le9A02 (A:191-285)
2b: CATH_1le9E02 (E:191-285)
2c: CATH_1le9B02 (B:246-350)
2d: CATH_1le9F02 (F:246-350)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.340, no name defined]
(30)
[unclassified]
(23)
1a
1le9A01
A:19-187
1b
1le9E01
E:19-187
1c
1le9B01
B:39-241
1d
1le9F01
F:39-241
Homologous Superfamily
:
Immunoglobulins
(2282)
[unclassified]
(54)
2a
1le9A02
A:191-285
2b
1le9E02
E:191-285
2c
1le9B02
B:246-350
2d
1le9F02
F:246-350
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_RHD_1le9F01 (F:42-240)
1b: PFAM_RHD_1le9F02 (F:42-240)
1c: PFAM_RHD_1le9E01 (E:21-186)
1d: PFAM_RHD_1le9E02 (E:21-186)
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Clan
:
P53-like
(54)
Family
:
RHD
(21)
Mus musculus (Mouse)
(8)
1a
RHD-1le9F01
F:42-240
1b
RHD-1le9F02
F:42-240
1c
RHD-1le9E01
E:21-186
1d
RHD-1le9E02
E:21-186
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Asymmetric Unit 1
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Asym.Unit (215 KB)
Header - Asym.Unit
Biol.Unit 1 (106 KB)
Header - Biol.Unit 1
Biol.Unit 2 (106 KB)
Header - Biol.Unit 2
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