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1LDE
Asym. Unit
Info
Asym.Unit (248 KB)
Biol.Unit 1 (124 KB)
Biol.Unit 2 (123 KB)
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(1)
Title
:
HORSE LIVER ALCOHOL DEHYDROGENASE COMPLEXED TO NADH AND N-FORMYL PIPERDINE
Authors
:
S. Ramaswamy, B. V. Plapp
Date
:
25 Dec 96 (Deposition) - 01 Apr 97 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: B,C (1x)
Biol. Unit 2: A,D (1x)
Keywords
:
Dehydrogenase, Alcohol, Nicotinamide Coenzyme, Formamides, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Ramaswamy, M. Scholze, B. V. Plapp
Binding Of Formamides To Liver Alcohol Dehydrogenase.
Biochemistry V. 36 3522 1997
(for further references see the
PDB file header
)
[
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]
Hetero Components
(3, 16)
Info
All Hetero Components
1a: N-FORMYLPIPERIDINE (FPIa)
1b: N-FORMYLPIPERIDINE (FPIb)
1c: N-FORMYLPIPERIDINE (FPIc)
1d: N-FORMYLPIPERIDINE (FPId)
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
2c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
2d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FPI
4
Ligand/Ion
N-FORMYLPIPERIDINE
2
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
3
ZN
8
Ligand/Ion
ZINC ION
[
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]
Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: NAD (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:46 , HIS A:67 , CYS A:174 , NAD A:377 , FPI A:378
BINDING SITE FOR RESIDUE ZN A 375
02
AC2
SOFTWARE
CYS A:97 , CYS A:100 , CYS A:103 , CYS A:111
BINDING SITE FOR RESIDUE ZN A 376
03
AC3
SOFTWARE
CYS B:46 , SER B:48 , HIS B:67 , CYS B:174 , NAD B:377 , FPI B:378
BINDING SITE FOR RESIDUE ZN B 375
04
AC4
SOFTWARE
CYS B:97 , CYS B:100 , CYS B:103 , CYS B:111
BINDING SITE FOR RESIDUE ZN B 376
05
AC5
SOFTWARE
CYS C:46 , HIS C:67 , CYS C:174 , NAD C:377 , FPI C:378
BINDING SITE FOR RESIDUE ZN C 375
06
AC6
SOFTWARE
CYS C:97 , CYS C:100 , CYS C:103 , CYS C:111
BINDING SITE FOR RESIDUE ZN C 376
07
AC7
SOFTWARE
CYS D:46 , HIS D:67 , CYS D:174 , NAD D:377 , FPI D:378
BINDING SITE FOR RESIDUE ZN D 375
08
AC8
SOFTWARE
CYS D:97 , CYS D:100 , CYS D:103 , CYS D:111
BINDING SITE FOR RESIDUE ZN D 376
09
AC9
SOFTWARE
ARG A:47 , SER A:48 , HIS A:51 , CYS A:174 , THR A:178 , GLY A:199 , GLY A:201 , GLY A:202 , VAL A:203 , ASP A:223 , ILE A:224 , LYS A:228 , VAL A:268 , ILE A:269 , ARG A:271 , VAL A:292 , GLY A:293 , VAL A:294 , ALA A:317 , ILE A:318 , PHE A:319 , ARG A:369 , ZN A:375 , FPI A:378 , HOH A:402 , HOH A:415 , HOH A:416 , HOH A:518
BINDING SITE FOR RESIDUE NAD A 377
10
BC1
SOFTWARE
CYS A:46 , SER A:48 , HIS A:67 , LEU A:116 , LEU A:141 , CYS A:174 , VAL A:294 , ZN A:375 , NAD A:377
BINDING SITE FOR RESIDUE FPI A 378
11
BC2
SOFTWARE
ARG B:47 , SER B:48 , HIS B:51 , CYS B:174 , THR B:178 , GLY B:199 , GLY B:201 , GLY B:202 , VAL B:203 , ASP B:223 , ILE B:224 , LYS B:228 , VAL B:268 , ILE B:269 , ARG B:271 , VAL B:292 , GLY B:293 , VAL B:294 , ALA B:317 , ILE B:318 , PHE B:319 , ARG B:369 , ZN B:375 , FPI B:378 , HOH B:413 , HOH B:414 , HOH B:513
BINDING SITE FOR RESIDUE NAD B 377
12
BC3
SOFTWARE
CYS B:46 , SER B:48 , HIS B:67 , LEU B:116 , LEU B:141 , CYS B:174 , VAL B:294 , ZN B:375 , NAD B:377
BINDING SITE FOR RESIDUE FPI B 378
13
BC4
SOFTWARE
ARG C:47 , SER C:48 , HIS C:51 , CYS C:174 , THR C:178 , GLY C:199 , LEU C:200 , GLY C:201 , GLY C:202 , VAL C:203 , ASP C:223 , ILE C:224 , LYS C:228 , VAL C:268 , ILE C:269 , ARG C:271 , VAL C:292 , GLY C:293 , VAL C:294 , ALA C:317 , ILE C:318 , PHE C:319 , ARG C:369 , ZN C:375 , FPI C:378 , HOH C:406 , HOH C:409 , HOH C:421 , HOH C:422 , HOH C:483
BINDING SITE FOR RESIDUE NAD C 377
14
BC5
SOFTWARE
CYS C:46 , SER C:48 , HIS C:67 , LEU C:116 , LEU C:141 , CYS C:174 , VAL C:294 , ZN C:375 , NAD C:377
BINDING SITE FOR RESIDUE FPI C 378
15
BC6
SOFTWARE
ARG D:47 , SER D:48 , HIS D:51 , CYS D:174 , THR D:178 , GLY D:201 , GLY D:202 , VAL D:203 , ASP D:223 , ILE D:224 , LYS D:228 , VAL D:268 , ILE D:269 , ARG D:271 , VAL D:292 , GLY D:293 , VAL D:294 , ALA D:317 , ILE D:318 , PHE D:319 , ARG D:369 , ZN D:375 , FPI D:378 , HOH D:447 , HOH D:451 , HOH D:464 , HOH D:532
BINDING SITE FOR RESIDUE NAD D 377
16
BC7
SOFTWARE
CYS D:46 , SER D:48 , HIS D:67 , LEU D:116 , LEU D:141 , CYS D:174 , ZN D:375 , NAD D:377
BINDING SITE FOR RESIDUE FPI D 378
17
NAD
UNKNOWN
ARG A:47 , SER A:48 , HIS A:51 , THR A:178
NICOTINAMIDE-ADENINE-DINUCLEOTIDE SITE
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ADH_ZINC (A:66-80,B:66-80,C:66-80,D:66-80)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_ZINC
PS00059
Zinc-containing alcohol dehydrogenases signature.
ADH1E_HORSE
67-81
4
A:66-80
B:66-80
C:66-80
D:66-80
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1ldea1 (A:1-163,A:340-374)
1b: SCOP_d1ldeb1 (B:1-163,B:340-374)
1c: SCOP_d1ldec1 (C:1-163,C:340-374)
1d: SCOP_d1lded1 (D:1-163,D:340-374)
2a: SCOP_d1ldea2 (A:164-339)
2b: SCOP_d1ldeb2 (B:164-339)
2c: SCOP_d1ldec2 (C:164-339)
2d: SCOP_d1lded2 (D:164-339)
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)
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)
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)
(
)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
GroES-like
(132)
Superfamily
:
GroES-like
(130)
Family
:
Alcohol dehydrogenase-like, N-terminal domain
(114)
Protein domain
:
Alcohol dehydrogenase
(77)
Horse (Equus caballus) [TaxId: 9796]
(40)
1a
d1ldea1
A:1-163,A:340-374
1b
d1ldeb1
B:1-163,B:340-374
1c
d1ldec1
C:1-163,C:340-374
1d
d1lded1
D:1-163,D:340-374
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Alcohol dehydrogenase-like, C-terminal domain
(115)
Protein domain
:
Alcohol dehydrogenase
(77)
Horse (Equus caballus) [TaxId: 9796]
(40)
2a
d1ldea2
A:164-339
2b
d1ldeb2
B:164-339
2c
d1ldec2
C:164-339
2d
d1lded2
D:164-339
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1ldeA02 (A:179-317)
1b: CATH_1ldeB02 (B:179-317)
1c: CATH_1ldeC02 (C:179-317)
1d: CATH_1ldeD02 (D:179-317)
2a: CATH_1ldeA01 (A:1-178,A:318-374)
2b: CATH_1ldeB01 (B:1-178,B:318-374)
2c: CATH_1ldeC01 (C:1-178,C:318-374)
2d: CATH_1ldeD01 (D:1-178,D:318-374)
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)
(
)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Horse (Equus caballus)
(33)
1a
1ldeA02
A:179-317
1b
1ldeB02
B:179-317
1c
1ldeC02
C:179-317
1d
1ldeD02
D:179-317
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Quinone Oxidoreductase; Chain A, domain 1
(131)
Homologous Superfamily
:
Medium-chain alcohol dehydrogenases, catalytic domain
(131)
Horse (Equus caballus)
(33)
2a
1ldeA01
A:1-178,A:318-374
2b
1ldeB01
B:1-178,B:318-374
2c
1ldeC01
C:1-178,C:318-374
2d
1ldeD01
D:1-178,D:318-374
[
close CATH info
]
Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_ADH_N_1ldeD01 (D:33-160)
1b: PFAM_ADH_N_1ldeD02 (D:33-160)
1c: PFAM_ADH_N_1ldeD03 (D:33-160)
1d: PFAM_ADH_N_1ldeD04 (D:33-160)
2a: PFAM_ADH_zinc_N_1ldeD05 (D:202-337)
2b: PFAM_ADH_zinc_N_1ldeD06 (D:202-337)
2c: PFAM_ADH_zinc_N_1ldeD07 (D:202-337)
2d: PFAM_ADH_zinc_N_1ldeD08 (D:202-337)
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Clans
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)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
GroES
(70)
Family
:
ADH_N
(62)
Equus caballus (Horse)
(15)
1a
ADH_N-1ldeD01
D:33-160
1b
ADH_N-1ldeD02
D:33-160
1c
ADH_N-1ldeD03
D:33-160
1d
ADH_N-1ldeD04
D:33-160
Clan
:
NADP_Rossmann
(1239)
Family
:
ADH_zinc_N
(75)
Equus caballus (Horse)
(15)
2a
ADH_zinc_N-1ldeD05
D:202-337
2b
ADH_zinc_N-1ldeD06
D:202-337
2c
ADH_zinc_N-1ldeD07
D:202-337
2d
ADH_zinc_N-1ldeD08
D:202-337
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Asym.Unit (248 KB)
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