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1LCU
Asym. Unit
Info
Asym.Unit (129 KB)
Biol.Unit 1 (123 KB)
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(1)
Title
:
POLYLYSINE INDUCES AN ANTIPARALLEL ACTIN DIMER THAT NUCLEATES FILAMENT ASSEMBLY: CRYSTAL STRUCTURE AT 3.5 A RESOLUTION
Authors
:
M. R. Bubb, L. Govindasamy, E. G. Yarmola, S. M. Vorobiev, S. C. Almo, T. Somasundaram, M. S. Chapman, M. Agbandje-Mckenna, R. Mckenna
Date
:
06 Apr 02 (Deposition) - 01 May 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Structural Protein, Muscle Protein, Contractile Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. R. Bubb, L. Govindasamy, E. G. Yarmola, S. M. Vorobiev, S. C. Almo, T. Somasundaram, M. S. Chapman, M. Agbandje-Mckenna, R. Mckenna
Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3. 5-A Resolution.
J. Biol. Chem. V. 277 20999 2002
(for further references see the
PDB file header
)
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
4a: LATRUNCULIN A (LARa)
4b: LATRUNCULIN A (LARb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
2
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
CA
4
Ligand/Ion
CALCIUM ION
3
CL
3
Ligand/Ion
CHLORIDE ION
4
LAR
2
Ligand/Ion
LATRUNCULIN A
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:147 , ASP A:164 , ATP A:390
BINDING SITE FOR RESIDUE CA A 412
02
AC2
SOFTWARE
HOH B:5 , HOH B:11 , HOH B:21 , GLN B:1147 , ASP B:1164 , ATP B:1390
BINDING SITE FOR RESIDUE CA B 1412
03
AC3
SOFTWARE
TYR A:179 , ALA A:180 , GLN B:1364
BINDING SITE FOR RESIDUE CA A 503
04
AC4
SOFTWARE
ARG A:193 , ARG A:216
BINDING SITE FOR RESIDUE CL A 506
05
AC5
SOFTWARE
ARG B:1216
BINDING SITE FOR RESIDUE CL B 507
06
AC6
SOFTWARE
VAL A:40
BINDING SITE FOR RESIDUE CA A 508
07
AC7
SOFTWARE
ARG A:157
BINDING SITE FOR RESIDUE CL A 512
08
AC8
SOFTWARE
GLY A:23 , SER A:24 , GLY A:25 , LEU A:26 , LYS A:28 , GLY A:166 , ASP A:167 , GLY A:168 , VAL A:169 , LYS A:223 , GLU A:224 , GLY A:312 , THR A:313 , MET A:315 , TYR A:316 , LYS A:346 , LAR A:411 , CA A:412 , HOH A:517 , HOH A:539
BINDING SITE FOR RESIDUE ATP A 390
09
AC9
SOFTWARE
LEU A:26 , ILE A:44 , GLN A:69 , TYR A:79 , ASP A:167 , GLY A:192 , ARG A:193 , THR A:196 , GLU A:217 , ARG A:220 , LYS A:223 , ATP A:390
BINDING SITE FOR RESIDUE LAR A 411
10
BC1
SOFTWARE
HOH B:5 , HOH B:11 , HOH B:21 , GLY B:1023 , SER B:1024 , GLY B:1025 , LEU B:1026 , LYS B:1028 , GLY B:1166 , ASP B:1167 , GLY B:1168 , VAL B:1169 , LYS B:1223 , GLU B:1224 , GLY B:1311 , GLY B:1312 , THR B:1313 , MET B:1315 , LAR B:1411 , CA B:1412
BINDING SITE FOR RESIDUE ATP B 1390
11
BC2
SOFTWARE
GLY B:1025 , LEU B:1026 , PRO B:1042 , GLN B:1069 , TYR B:1079 , ASP B:1167 , GLY B:1192 , ARG B:1193 , THR B:1196 , GLU B:1217 , ARG B:1220 , ATP B:1390
BINDING SITE FOR RESIDUE LAR B 1411
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: ACTINS_1 (A:63-73,B:1063-1073)
2: ACTINS_ACT_LIKE (A:114-126,B:1114-1126)
3: ACTINS_2 (A:366-374,B:1366-1374)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACTINS_1
PS00406
Actins signature 1.
ACTS_RABIT
55-65
2
A:63-73
B:1063-1073
2
ACTINS_ACT_LIKE
PS01132
Actins and actin-related proteins signature.
ACTS_RABIT
106-118
2
A:114-126
B:1114-1126
3
ACTINS_2
PS00432
Actins signature 2.
ACTS_RABIT
358-366
2
A:366-374
B:1366-1374
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1lcua1 (A:15-157)
1b: SCOP_d1lcua2 (A:158-385)
1c: SCOP_d1lcub1 (B:1015-1157)
1d: SCOP_d1lcub2 (B:1158-1385)
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Protein Domains
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)
(
)
Organisms
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)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Actin/HSP70
(199)
Protein domain
:
Actin
(69)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(55)
1a
d1lcua1
A:15-157
1b
d1lcua2
A:158-385
1c
d1lcub1
B:1015-1157
1d
d1lcub2
B:1158-1385
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CATH Domains
(3, 8)
Info
all CATH domains
1a: CATH_1lcuA01 (A:16-44,A:81-144,A:347-379)
1b: CATH_1lcuA03 (A:146-191,A:281-342)
1c: CATH_1lcuB01 (B:1015-1041,B:1083-1148,B:1348-1384)
1d: CATH_1lcuB03 (B:1149-1195,B:1285-1347)
2a: CATH_1lcuA04 (A:192-277)
2b: CATH_1lcuB04 (B:1196-1284)
3a: CATH_1lcuA02 (A:45-78)
3b: CATH_1lcuB02 (B:1042-1082)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.40, no name defined]
(217)
Rabbit (Oryctolagus cuniculus)
(44)
1a
1lcuA01
A:16-44,A:81-144,A:347-379
1b
1lcuA03
A:146-191,A:281-342
1c
1lcuB01
B:1015-1041,B:1083-1148,B:1348-1384
1d
1lcuB03
B:1149-1195,B:1285-1347
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Actin; Chain A, domain 4
(156)
Homologous Superfamily
:
Actin; Chain A, domain 4
(155)
Rabbit (Oryctolagus cuniculus)
(44)
2a
1lcuA04
A:192-277
2b
1lcuB04
B:1196-1284
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Actin; Chain A, domain 2
(36)
Homologous Superfamily
:
Actin; Chain A, domain 2
(36)
Rabbit (Oryctolagus cuniculus)
(17)
3a
1lcuA02
A:45-78
3b
1lcuB02
B:1042-1082
[
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]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Actin_1lcuB01 (B:1015-1385)
1b: PFAM_Actin_1lcuB02 (B:1015-1385)
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Clans
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Organisms
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)
(
)
Clan
:
Actin_ATPase
(173)
Family
:
Actin
(70)
Oryctolagus cuniculus (Rabbit)
(47)
1a
Actin-1lcuB01
B:1015-1385
1b
Actin-1lcuB02
B:1015-1385
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