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1LCP
Asym. Unit
Info
Asym.Unit (177 KB)
Biol.Unit 1 (509 KB)
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(1)
Title
:
BOVINE LENS LEUCINE AMINOPEPTIDASE COMPLEXED WITH L-LEUCINE PHOSPHONIC ACID
Authors
:
N. Straeter, W. N. Lipscomb
Date
:
12 May 95 (Deposition) - 31 Jul 95 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
Hydrolase (Alpha-Aminoacylpeptide)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Strater, W. N. Lipscomb
Transition State Analogue L-Leucinephosphonic Acid Bound To Bovine Lens Leucine Aminopeptidase: X-Ray Structure At 1. 65 A Resolution In A New Crystal Form.
Biochemistry V. 34 9200 1995
(for further references see the
PDB file header
)
[
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]
Hetero Components
(3, 14)
Info
All Hetero Components
1a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
1b: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDb)
1c: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDc)
1d: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDd)
1e: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDe)
1f: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDf)
2a: LEUCINE PHOSPHONIC ACID (PLUa)
2b: LEUCINE PHOSPHONIC ACID (PLUb)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MRD
6
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
2
PLU
2
Ligand/Ion
LEUCINE PHOSPHONIC ACID
3
ZN
6
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: ASA (UNKNOWN)
11: ASB (UNKNOWN)
12: BC1 (SOFTWARE)
13: BC2 (SOFTWARE)
14: BC3 (SOFTWARE)
15: BC4 (SOFTWARE)
16: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:255 , ASP A:332 , GLU A:334 , ZN A:489 , PLU A:500
BINDING SITE FOR RESIDUE ZN A 488
02
AC2
SOFTWARE
LYS A:250 , ASP A:255 , ASP A:273 , GLU A:334 , ZN A:488 , PLU A:500
BINDING SITE FOR RESIDUE ZN A 489
03
AC3
SOFTWARE
LEU A:170 , MET A:171 , THR A:173 , ARG A:271 , MET A:274 , HOH A:525
BINDING SITE FOR RESIDUE ZN A 490
04
AC4
SOFTWARE
ASP B:255 , ASP B:332 , GLU B:334 , ZN B:489 , PLU B:500
BINDING SITE FOR RESIDUE ZN B 488
05
AC5
SOFTWARE
LYS B:250 , ASP B:255 , ASP B:273 , GLU B:334 , ZN B:488 , PLU B:500
BINDING SITE FOR RESIDUE ZN B 489
06
AC6
SOFTWARE
LEU B:170 , MET B:171 , THR B:173 , ARG B:271 , MET B:274 , HOH B:588
BINDING SITE FOR RESIDUE ZN B 490
07
AC7
SOFTWARE
LYS A:250 , ASP A:255 , LYS A:262 , ASP A:273 , ASP A:332 , GLU A:334 , THR A:359 , LEU A:360 , ALA A:451 , MET A:454 , ZN A:488 , ZN A:489 , HOH A:713 , HOH A:756 , HOH A:989
BINDING SITE FOR RESIDUE PLU A 500
08
AC8
SOFTWARE
LYS B:250 , ASP B:255 , LYS B:262 , ASP B:273 , ASP B:332 , GLU B:334 , THR B:359 , LEU B:360 , ALA B:451 , ZN B:488 , ZN B:489 , HOH B:587 , HOH B:929 , HOH B:985
BINDING SITE FOR RESIDUE PLU B 500
09
AC9
SOFTWARE
TRP B:82 , ASN B:88 , HOH B:545 , HOH B:646 , HOH B:707 , HOH B:921
BINDING SITE FOR RESIDUE MRD B 501
10
ASA
UNKNOWN
GLU A:334 , ASP A:255 , ASP A:332 , ASP A:273 , LYS A:250 , LYS A:262 , GLY A:335 , ARG A:336 , LEU A:360 , THR A:361 , GLY A:362
NULL
11
ASB
UNKNOWN
GLU B:334 , ASP B:255 , ASP B:332 , ASP B:273 , LYS B:250 , LYS B:262 , GLY B:335 , ARG B:336 , LEU B:360 , THR B:361 , GLY B:362
NULL
12
BC1
SOFTWARE
TRP A:82 , ASN A:88 , HOH A:576 , HOH A:744 , HOH A:831 , HOH B:560
BINDING SITE FOR RESIDUE MRD A 501
13
BC2
SOFTWARE
LEU A:46 , THR A:51 , ARG A:52 , HOH A:649 , ASP B:102
BINDING SITE FOR RESIDUE MRD A 502
14
BC3
SOFTWARE
ASP A:102 , LEU A:103 , LEU B:46 , LYS B:50 , THR B:51 , ARG B:52 , HOH B:581
BINDING SITE FOR RESIDUE MRD B 502
15
BC4
SOFTWARE
HIS A:233 , PRO A:244 , ASN A:295 , ILE A:296 , VAL A:297 , HOH A:568 , HOH A:580 , HOH A:841
BINDING SITE FOR RESIDUE MRD A 503
16
BC5
SOFTWARE
ASN B:295 , ILE B:296 , HOH B:617 , HOH B:889
BINDING SITE FOR RESIDUE MRD B 503
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CYTOSOL_AP (A:330-337,B:330-337)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOSOL_AP
PS00631
Cytosol aminopeptidase signature.
AMPL_BOVIN
362-369
2
A:330-337
B:330-337
[
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Exons
(13, 26)
Info
All Exons
Exon 1.1 (A:1-2 | B:1-2)
Exon 1.2 (A:3-41 | B:3-41)
Exon 1.3 (A:41-59 | B:41-59)
Exon 1.4 (A:60-95 | B:60-95)
Exon 1.5 (A:95-148 | B:95-148)
Exon 1.6 (A:148-203 | B:148-203)
Exon 1.7 (A:203-256 | B:203-256)
Exon 1.8 (A:256-298 | B:256-298)
Exon 1.9 (A:298-327 | B:298-327)
Exon 1.10 (A:328-362 | B:328-362)
Exon 1.11 (A:362-388 | B:362-388)
Exon 1.12 (A:389-425 | B:389-425)
Exon 1.13 (A:425-484 | B:425-484)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/1.12
13: Boundary 1.12/1.13
14: Boundary 1.13/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000007860
1
ENSBTAE00000063203
chr6:
37961794-37961895
102
AMPL_BOVIN
1-34
34
2
A:1-2
B:1-2
2
2
1.2
ENSBTAT00000007860
2
ENSBTAE00000063205
chr6:
37964129-37964244
116
AMPL_BOVIN
35-73
39
2
A:3-41
B:3-41
39
39
1.3
ENSBTAT00000007860
3
ENSBTAE00000308864
chr6:
37965550-37965604
55
AMPL_BOVIN
73-91
19
2
A:41-59
B:41-59
19
19
1.4
ENSBTAT00000007860
4
ENSBTAE00000063209
chr6:
37966063-37966168
106
AMPL_BOVIN
92-127
36
2
A:60-95
B:60-95
36
36
1.5
ENSBTAT00000007860
5
ENSBTAE00000063210
chr6:
37967574-37967733
160
AMPL_BOVIN
127-180
54
2
A:95-148
B:95-148
54
54
1.6
ENSBTAT00000007860
6
ENSBTAE00000063212
chr6:
37969197-37969361
165
AMPL_BOVIN
180-235
56
2
A:148-203
B:148-203
56
56
1.7
ENSBTAT00000007860
7
ENSBTAE00000063213
chr6:
37971885-37972043
159
AMPL_BOVIN
235-288
54
2
A:203-256
B:203-256
54
54
1.8
ENSBTAT00000007860
8
ENSBTAE00000063215
chr6:
37977709-37977833
125
AMPL_BOVIN
288-330
43
2
A:256-298
B:256-298
43
43
1.9
ENSBTAT00000007860
9
ENSBTAE00000063217
chr6:
37978975-37979063
89
AMPL_BOVIN
330-359
30
2
A:298-327
B:298-327
30
30
1.10
ENSBTAT00000007860
10
ENSBTAE00000308863
chr6:
37979919-37980021
103
AMPL_BOVIN
360-394
35
2
A:328-362
B:328-362
35
35
1.11
ENSBTAT00000007860
11
ENSBTAE00000063220
chr6:
37984212-37984291
80
AMPL_BOVIN
394-420
27
2
A:362-388
B:362-388
27
27
1.12
ENSBTAT00000007860
12
ENSBTAE00000063222
chr6:
37986042-37986151
110
AMPL_BOVIN
421-457
37
2
A:389-425
B:389-425
37
37
1.13
ENSBTAT00000007860
13
ENSBTAE00000063223
chr6:
37986603-37987164
562
AMPL_BOVIN
457-519
63
2
A:425-484
B:425-484
60
60
[
close EXON info
]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1lcpa1 (A:1-159)
1b: SCOP_d1lcpb1 (B:1-159)
2a: SCOP_d1lcpa2 (A:160-484)
2b: SCOP_d1lcpb2 (B:160-484)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Macro domain-like
(42)
Superfamily
:
Macro domain-like
(42)
Family
:
Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
(8)
Protein domain
:
Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
(8)
Cow (Bos taurus) [TaxId: 9913]
(7)
1a
d1lcpa1
A:1-159
1b
d1lcpb1
B:1-159
Fold
:
Phosphorylase/hydrolase-like
(558)
Superfamily
:
Zn-dependent exopeptidases
(214)
Family
:
Leucine aminopeptidase, C-terminal domain
(10)
Protein domain
:
Leucine aminopeptidase, C-terminal domain
(8)
Cow (Bos taurus) [TaxId: 9913]
(7)
2a
d1lcpa2
A:160-484
2b
d1lcpb2
B:160-484
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1lcpA02 (A:166-483)
1b: CATH_1lcpB02 (B:166-483)
2a: CATH_1lcpA01 (A:1-165)
2b: CATH_1lcpB01 (B:1-165)
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Homologous Superfamilies
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aminopeptidase
(284)
Homologous Superfamily
:
Zn peptidases
(137)
Cattle (Bos taurus)
(28)
1a
1lcpA02
A:166-483
1b
1lcpB02
B:166-483
Topology
:
Leucine Aminopeptidase, subunit E; domain 1
(21)
Homologous Superfamily
:
Leucine Aminopeptidase, subunit E, domain 1
(21)
Cattle (Bos taurus)
(5)
2a
1lcpA01
A:1-165
2b
1lcpB01
B:1-165
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Peptidase_M17_N_1lcpB01 (B:5-137)
1b: PFAM_Peptidase_M17_N_1lcpB02 (B:5-137)
2a: PFAM_Peptidase_M17_1lcpB03 (B:164-477)
2b: PFAM_Peptidase_M17_1lcpB04 (B:164-477)
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Clan
:
MACRO
(14)
Family
:
Peptidase_M17_N
(5)
Bos taurus (Bovine)
(3)
1a
Peptidase_M17_N-1lcpB01
B:5-137
1b
Peptidase_M17_N-1lcpB02
B:5-137
Clan
:
Peptidase_MH
(119)
Family
:
Peptidase_M17
(9)
Bos taurus (Bovine)
(3)
2a
Peptidase_M17-1lcpB03
B:164-477
2b
Peptidase_M17-1lcpB04
B:164-477
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