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1LCP
Biol. Unit 1
Info
Asym.Unit (177 KB)
Biol.Unit 1 (509 KB)
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(1)
Title
:
BOVINE LENS LEUCINE AMINOPEPTIDASE COMPLEXED WITH L-LEUCINE PHOSPHONIC ACID
Authors
:
N. Straeter, W. N. Lipscomb
Date
:
12 May 95 (Deposition) - 31 Jul 95 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
Hydrolase (Alpha-Aminoacylpeptide)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Strater, W. N. Lipscomb
Transition State Analogue L-Leucinephosphonic Acid Bound To Bovine Lens Leucine Aminopeptidase: X-Ray Structure At 1. 65 A Resolution In A New Crystal Form.
Biochemistry V. 34 9200 1995
(for further references see the
PDB file header
)
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Hetero Components
(2, 24)
Info
All Hetero Components
1a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
1b: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDb)
1c: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDc)
1d: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDd)
1e: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDe)
1f: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDf)
2a: LEUCINE PHOSPHONIC ACID (PLUa)
2b: LEUCINE PHOSPHONIC ACID (PLUb)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MRD
18
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
2
PLU
6
Ligand/Ion
LEUCINE PHOSPHONIC ACID
3
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: ASA (UNKNOWN)
11: ASB (UNKNOWN)
12: BC1 (SOFTWARE)
13: BC2 (SOFTWARE)
14: BC3 (SOFTWARE)
15: BC4 (SOFTWARE)
16: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:255 , ASP A:332 , GLU A:334 , ZN A:489 , PLU A:500
BINDING SITE FOR RESIDUE ZN A 488
02
AC2
SOFTWARE
LYS A:250 , ASP A:255 , ASP A:273 , GLU A:334 , ZN A:488 , PLU A:500
BINDING SITE FOR RESIDUE ZN A 489
03
AC3
SOFTWARE
LEU A:170 , MET A:171 , THR A:173 , ARG A:271 , MET A:274 , HOH A:525
BINDING SITE FOR RESIDUE ZN A 490
04
AC4
SOFTWARE
ASP B:255 , ASP B:332 , GLU B:334 , ZN B:489 , PLU B:500
BINDING SITE FOR RESIDUE ZN B 488
05
AC5
SOFTWARE
LYS B:250 , ASP B:255 , ASP B:273 , GLU B:334 , ZN B:488 , PLU B:500
BINDING SITE FOR RESIDUE ZN B 489
06
AC6
SOFTWARE
LEU B:170 , MET B:171 , THR B:173 , ARG B:271 , MET B:274 , HOH B:588
BINDING SITE FOR RESIDUE ZN B 490
07
AC7
SOFTWARE
LYS A:250 , ASP A:255 , LYS A:262 , ASP A:273 , ASP A:332 , GLU A:334 , THR A:359 , LEU A:360 , ALA A:451 , MET A:454 , ZN A:488 , ZN A:489 , HOH A:713 , HOH A:756 , HOH A:989
BINDING SITE FOR RESIDUE PLU A 500
08
AC8
SOFTWARE
LYS B:250 , ASP B:255 , LYS B:262 , ASP B:273 , ASP B:332 , GLU B:334 , THR B:359 , LEU B:360 , ALA B:451 , ZN B:488 , ZN B:489 , HOH B:587 , HOH B:929 , HOH B:985
BINDING SITE FOR RESIDUE PLU B 500
09
AC9
SOFTWARE
TRP B:82 , ASN B:88 , HOH B:545 , HOH B:646 , HOH B:707 , HOH B:921
BINDING SITE FOR RESIDUE MRD B 501
10
ASA
UNKNOWN
GLU A:334 , ASP A:255 , ASP A:332 , ASP A:273 , LYS A:250 , LYS A:262 , GLY A:335 , ARG A:336 , LEU A:360 , THR A:361 , GLY A:362
NULL
11
ASB
UNKNOWN
GLU B:334 , ASP B:255 , ASP B:332 , ASP B:273 , LYS B:250 , LYS B:262 , GLY B:335 , ARG B:336 , LEU B:360 , THR B:361 , GLY B:362
NULL
12
BC1
SOFTWARE
TRP A:82 , ASN A:88 , HOH A:576 , HOH A:744 , HOH A:831 , HOH B:560
BINDING SITE FOR RESIDUE MRD A 501
13
BC2
SOFTWARE
LEU A:46 , THR A:51 , ARG A:52 , HOH A:649 , ASP B:102
BINDING SITE FOR RESIDUE MRD A 502
14
BC3
SOFTWARE
ASP A:102 , LEU A:103 , LEU B:46 , LYS B:50 , THR B:51 , ARG B:52 , HOH B:581
BINDING SITE FOR RESIDUE MRD B 502
15
BC4
SOFTWARE
HIS A:233 , PRO A:244 , ASN A:295 , ILE A:296 , VAL A:297 , HOH A:568 , HOH A:580 , HOH A:841
BINDING SITE FOR RESIDUE MRD A 503
16
BC5
SOFTWARE
ASN B:295 , ILE B:296 , HOH B:617 , HOH B:889
BINDING SITE FOR RESIDUE MRD B 503
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: CYTOSOL_AP (A:330-337,B:330-337)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOSOL_AP
PS00631
Cytosol aminopeptidase signature.
AMPL_BOVIN
362-369
6
A:330-337
B:330-337
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1lcpa1 (A:1-159)
1b: SCOP_d1lcpb1 (B:1-159)
2a: SCOP_d1lcpa2 (A:160-484)
2b: SCOP_d1lcpb2 (B:160-484)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Macro domain-like
(42)
Superfamily
:
Macro domain-like
(42)
Family
:
Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
(8)
Protein domain
:
Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
(8)
Cow (Bos taurus) [TaxId: 9913]
(7)
1a
d1lcpa1
A:1-159
1b
d1lcpb1
B:1-159
Fold
:
Phosphorylase/hydrolase-like
(558)
Superfamily
:
Zn-dependent exopeptidases
(214)
Family
:
Leucine aminopeptidase, C-terminal domain
(10)
Protein domain
:
Leucine aminopeptidase, C-terminal domain
(8)
Cow (Bos taurus) [TaxId: 9913]
(7)
2a
d1lcpa2
A:160-484
2b
d1lcpb2
B:160-484
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1lcpA02 (A:166-483)
1b: CATH_1lcpB02 (B:166-483)
2a: CATH_1lcpA01 (A:1-165)
2b: CATH_1lcpB01 (B:1-165)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aminopeptidase
(284)
Homologous Superfamily
:
Zn peptidases
(137)
Cattle (Bos taurus)
(28)
1a
1lcpA02
A:166-483
1b
1lcpB02
B:166-483
Topology
:
Leucine Aminopeptidase, subunit E; domain 1
(21)
Homologous Superfamily
:
Leucine Aminopeptidase, subunit E, domain 1
(21)
Cattle (Bos taurus)
(5)
2a
1lcpA01
A:1-165
2b
1lcpB01
B:1-165
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Peptidase_M17_N_1lcpB01 (B:5-137)
1b: PFAM_Peptidase_M17_N_1lcpB02 (B:5-137)
2a: PFAM_Peptidase_M17_1lcpB03 (B:164-477)
2b: PFAM_Peptidase_M17_1lcpB04 (B:164-477)
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Organisms
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Clan
:
MACRO
(14)
Family
:
Peptidase_M17_N
(5)
Bos taurus (Bovine)
(3)
1a
Peptidase_M17_N-1lcpB01
B:5-137
1b
Peptidase_M17_N-1lcpB02
B:5-137
Clan
:
Peptidase_MH
(119)
Family
:
Peptidase_M17
(9)
Bos taurus (Bovine)
(3)
2a
Peptidase_M17-1lcpB03
B:164-477
2b
Peptidase_M17-1lcpB04
B:164-477
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