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1LC0
Asym. Unit
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Asym.Unit (60 KB)
Biol.Unit 1 (56 KB)
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(1)
Title
:
STRUCTURE OF BILIVERDIN REDUCTASE AND THE ENZYME-NADH COMPLEX
Authors
:
F. G. Whitby, J. D. Phillips, C. P. Hill, W. Mccoubrey, M. D. Maines
Date
:
04 Apr 02 (Deposition) - 17 Jul 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Biliverdin Reductase, Oxidoreductase, Tetrapyrrole, Bile Pigment, Heme, Bilirubin, Nadh
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. G. Whitby, J. D. Phillips, C. P. Hill, W. Mccoubrey, M. D. Maines
Crystal Structure Of A Biliverdin Ixalpha Reductase Enzyme-Cofactor Complex.
J. Mol. Biol. V. 319 1199 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: PHOSPHATE ION (PO4a)
1b: PHOSPHATE ION (PO4b)
1c: PHOSPHATE ION (PO4c)
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No.
Name
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Type
Full Name
1
PO4
3
Ligand/Ion
PHOSPHATE ION
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Sites
(3, 3)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:16 , SER A:43 , ARG A:44 , ARG A:45 , LYS A:209 , HOH A:1031 , HOH A:1070 , HOH A:1171
BINDING SITE FOR RESIDUE PO4 A 601
2
AC2
SOFTWARE
SER A:102 , PHE A:103 , ALA A:104 , SER A:285 , LYS A:289 , HOH A:1121 , HOH A:1253 , HOH A:1293 , HOH A:1299
BINDING SITE FOR RESIDUE PO4 A 602
3
AC3
SOFTWARE
GLY A:17 , ARG A:18 , HOH A:1061 , HOH A:1064 , HOH A:1322
BINDING SITE FOR RESIDUE PO4 A 603
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1lc0a2 (A:129-246)
2a: SCOP_d1lc0a1 (A:2-128,A:247-291)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FwdE/GAPDH domain-like
(188)
Superfamily
:
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
(179)
Family
:
Biliverdin reductase
(3)
Protein domain
:
Biliverdin reductase
(3)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(3)
1a
d1lc0a2
A:129-246
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
(179)
Protein domain
:
Biliverdin reductase
(3)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(3)
2a
d1lc0a1
A:2-128,A:247-291
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1lc0A02 (A:124-244,A:266-291)
2a: CATH_1lc0A01 (A:2-123,A:245-265)
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)
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dihydrodipicolinate Reductase; domain 2
(182)
Homologous Superfamily
:
Dihydrodipicolinate Reductase; domain 2
(178)
Norway rat (Rattus norvegicus)
(5)
1a
1lc0A02
A:124-244,A:266-291
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Norway rat (Rattus norvegicus)
(18)
2a
1lc0A01
A:2-123,A:245-265
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_GFO_IDH_MocA_1lc0A01 (A:9-124)
2a: PFAM_Biliv_reduc_cat_1lc0A02 (A:131-245)
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Clan
:
NADP_Rossmann
(1239)
Family
:
GFO_IDH_MocA
(25)
Rattus norvegicus (Rat)
(2)
1a
GFO_IDH_MocA-1lc0A01
A:9-124
Clan
:
no clan defined [family: Biliv-reduc_cat]
(2)
Family
:
Biliv-reduc_cat
(2)
Rattus norvegicus (Rat)
(2)
2a
Biliv-reduc_cat-1lc0A02
A:131-245
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Asymmetric Unit 1
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