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1LB1
Biol. Unit 2
Info
Asym.Unit (310 KB)
Biol.Unit 1 (80 KB)
Biol.Unit 2 (80 KB)
Biol.Unit 3 (80 KB)
Biol.Unit 4 (80 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE DBL AND PLECKSTRIN HOMOLOGY DOMAINS OF DBS IN COMPLEX WITH RHOA
Authors
:
J. T. Snyder, D. K. Worthylake, K. L. Rossman, L. Betts, W. M. Pruitt, D. P. Siderovski, C. J. Der, J. Sondek
Date
:
01 Apr 02 (Deposition) - 29 May 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.81
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Guanine Nucleotide Exchange Factor, Small G-Protein, Rhoa, Dbs, Dh Domain, Ph Domain, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. T. Snyder, D. K. Worthylake, K. L. Rossman, L. Betts, W. M. Pruitt, D. P. Siderovski, C. J. Der, J. Sondek
Structural Basis For The Selective Activation Of Rho Gtpases By Dbl Exchange Factors.
Nat. Struct. Biol. V. 9 468 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
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Sorry, no Info available
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: DH_2 (C:632-812)
2: DH_1 (C:761-786)
3: PH_DOMAIN (C:830-946)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DH_2
PS50010
Dbl homology (DH) domain profile.
MCF2L_MOUSE
632-812
1
-
C:632-812
-
-
2
DH_1
PS00741
Dbl homology (DH) domain signature.
MCF2L_MOUSE
761-786
1
-
C:761-786
-
-
3
PH_DOMAIN
PS50003
PH domain profile.
MCF2L_MOUSE
830-946
1
-
C:830-946
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d1lb1a1 (A:624-818)
1b: SCOP_d1lb1c1 (C:624-818)
1c: SCOP_d1lb1e1 (E:624-818)
1d: SCOP_d1lb1g1 (G:624-818)
2a: SCOP_d1lb1a2 (A:819-953)
2b: SCOP_d1lb1c2 (C:819-953)
2c: SCOP_d1lb1e2 (E:819-953)
2d: SCOP_d1lb1g2 (G:819-953)
3a: SCOP_d1lb1b_ (B:)
3b: SCOP_d1lb1d_ (D:)
3c: SCOP_d1lb1f_ (F:)
3d: SCOP_d1lb1h_ (H:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DBL homology domain (DH-domain)
(22)
Superfamily
:
DBL homology domain (DH-domain)
(22)
Family
:
DBL homology domain (DH-domain)
(19)
Protein domain
:
Dbl's big sister, Dbs
(4)
Mouse (Mus musculus) [TaxId: 10090]
(4)
1a
d1lb1a1
A:624-818
1b
d1lb1c1
C:624-818
1c
d1lb1e1
E:624-818
1d
d1lb1g1
G:624-818
Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
Pleckstrin-homology domain (PH domain)
(102)
Protein domain
:
Dbl's big sister, Dbs
(4)
Mouse (Mus musculus) [TaxId: 10090]
(4)
2a
d1lb1a2
A:819-953
2b
d1lb1c2
C:819-953
2c
d1lb1e2
E:819-953
2d
d1lb1g2
G:819-953
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
RhoA
(19)
Human (Homo sapiens) [TaxId: 9606]
(19)
3a
d1lb1b_
B:
3b
d1lb1d_
D:
3c
d1lb1f_
F:
3d
d1lb1h_
H:
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CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_1lb1B00 (B:3-180)
1b: CATH_1lb1D00 (D:3-180)
1c: CATH_1lb1F00 (F:3-180)
1d: CATH_1lb1H00 (H:3-180)
2a: CATH_1lb1A01 (A:624-816)
2b: CATH_1lb1C01 (C:624-816)
2c: CATH_1lb1E01 (E:624-816)
2d: CATH_1lb1G01 (G:624-816)
3a: CATH_1lb1A02 (A:817-953)
3b: CATH_1lb1C02 (C:817-953)
3c: CATH_1lb1E02 (E:817-953)
3d: CATH_1lb1G02 (G:817-953)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
House mouse (Mus musculus)
(47)
1a
1lb1B00
B:3-180
1b
1lb1D00
D:3-180
1c
1lb1F00
F:3-180
1d
1lb1H00
H:3-180
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Dbl Homology Domain; Chain A
(13)
Homologous Superfamily
:
Dbl Homology Domain; Chain A
(13)
House mouse (Mus musculus)
(7)
2a
1lb1A01
A:624-816
2b
1lb1C01
C:624-816
2c
1lb1E01
E:624-816
2d
1lb1G01
G:624-816
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
PH-domain like
(150)
Homologous Superfamily
:
Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)
(147)
House mouse (Mus musculus)
(39)
3a
1lb1A02
A:817-953
3b
1lb1C02
C:817-953
3c
1lb1E02
E:817-953
3d
1lb1G02
G:817-953
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Pfam Domains
(3, 12)
Info
all PFAM domains
1a: PFAM_Ras_1lb1H01 (H:7-180)
1b: PFAM_Ras_1lb1H02 (H:7-180)
1c: PFAM_Ras_1lb1H03 (H:7-180)
1d: PFAM_Ras_1lb1H04 (H:7-180)
2a: PFAM_PH_1lb1G01 (G:842-946)
2b: PFAM_PH_1lb1G02 (G:842-946)
2c: PFAM_PH_1lb1G03 (G:842-946)
2d: PFAM_PH_1lb1G04 (G:842-946)
3a: PFAM_RhoGEF_1lb1G05 (G:636-811)
3b: PFAM_RhoGEF_1lb1G06 (G:636-811)
3c: PFAM_RhoGEF_1lb1G07 (G:636-811)
3d: PFAM_RhoGEF_1lb1G08 (G:636-811)
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Clan
:
P-loop_NTPase
(1112)
Family
:
Ras
(176)
Homo sapiens (Human)
(141)
1a
Ras-1lb1H01
H:7-180
1b
Ras-1lb1H02
H:7-180
1c
Ras-1lb1H03
H:7-180
1d
Ras-1lb1H04
H:7-180
Clan
:
PH
(111)
Family
:
PH
(71)
Mus musculus (Mouse)
(20)
2a
PH-1lb1G01
G:842-946
2b
PH-1lb1G02
G:842-946
2c
PH-1lb1G03
G:842-946
2d
PH-1lb1G04
G:842-946
Clan
:
no clan defined [family: RhoGEF]
(22)
Family
:
RhoGEF
(22)
Mus musculus (Mouse)
(5)
3a
RhoGEF-1lb1G05
G:636-811
3b
RhoGEF-1lb1G06
G:636-811
3c
RhoGEF-1lb1G07
G:636-811
3d
RhoGEF-1lb1G08
G:636-811
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Asym.Unit (310 KB)
Header - Asym.Unit
Biol.Unit 1 (80 KB)
Header - Biol.Unit 1
Biol.Unit 2 (80 KB)
Header - Biol.Unit 2
Biol.Unit 3 (80 KB)
Header - Biol.Unit 3
Biol.Unit 4 (80 KB)
Header - Biol.Unit 4
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