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1LB1
Asym. Unit
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Asym.Unit (310 KB)
Biol.Unit 1 (80 KB)
Biol.Unit 2 (80 KB)
Biol.Unit 3 (80 KB)
Biol.Unit 4 (80 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE DBL AND PLECKSTRIN HOMOLOGY DOMAINS OF DBS IN COMPLEX WITH RHOA
Authors
:
J. T. Snyder, D. K. Worthylake, K. L. Rossman, L. Betts, W. M. Pruitt, D. P. Siderovski, C. J. Der, J. Sondek
Date
:
01 Apr 02 (Deposition) - 29 May 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.81
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Guanine Nucleotide Exchange Factor, Small G-Protein, Rhoa, Dbs, Dh Domain, Ph Domain, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. T. Snyder, D. K. Worthylake, K. L. Rossman, L. Betts, W. M. Pruitt, D. P. Siderovski, C. J. Der, J. Sondek
Structural Basis For The Selective Activation Of Rho Gtpases By Dbl Exchange Factors.
Nat. Struct. Biol. V. 9 468 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: DH_2 (A:632-812,C:632-812,E:632-812,G:63...)
2: DH_1 (A:761-786,C:761-786,E:761-786,G:76...)
3: PH_DOMAIN (A:830-946,C:830-946,E:830-946,G:83...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DH_2
PS50010
Dbl homology (DH) domain profile.
MCF2L_MOUSE
632-812
4
A:632-812
C:632-812
E:632-812
G:632-812
2
DH_1
PS00741
Dbl homology (DH) domain signature.
MCF2L_MOUSE
761-786
4
A:761-786
C:761-786
E:761-786
G:761-786
3
PH_DOMAIN
PS50003
PH domain profile.
MCF2L_MOUSE
830-946
4
A:830-946
C:830-946
E:830-946
G:830-946
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d1lb1a1 (A:624-818)
1b: SCOP_d1lb1c1 (C:624-818)
1c: SCOP_d1lb1e1 (E:624-818)
1d: SCOP_d1lb1g1 (G:624-818)
2a: SCOP_d1lb1a2 (A:819-953)
2b: SCOP_d1lb1c2 (C:819-953)
2c: SCOP_d1lb1e2 (E:819-953)
2d: SCOP_d1lb1g2 (G:819-953)
3a: SCOP_d1lb1b_ (B:)
3b: SCOP_d1lb1d_ (D:)
3c: SCOP_d1lb1f_ (F:)
3d: SCOP_d1lb1h_ (H:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DBL homology domain (DH-domain)
(22)
Superfamily
:
DBL homology domain (DH-domain)
(22)
Family
:
DBL homology domain (DH-domain)
(19)
Protein domain
:
Dbl's big sister, Dbs
(4)
Mouse (Mus musculus) [TaxId: 10090]
(4)
1a
d1lb1a1
A:624-818
1b
d1lb1c1
C:624-818
1c
d1lb1e1
E:624-818
1d
d1lb1g1
G:624-818
Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
Pleckstrin-homology domain (PH domain)
(102)
Protein domain
:
Dbl's big sister, Dbs
(4)
Mouse (Mus musculus) [TaxId: 10090]
(4)
2a
d1lb1a2
A:819-953
2b
d1lb1c2
C:819-953
2c
d1lb1e2
E:819-953
2d
d1lb1g2
G:819-953
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
RhoA
(19)
Human (Homo sapiens) [TaxId: 9606]
(19)
3a
d1lb1b_
B:
3b
d1lb1d_
D:
3c
d1lb1f_
F:
3d
d1lb1h_
H:
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CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_1lb1B00 (B:3-180)
1b: CATH_1lb1D00 (D:3-180)
1c: CATH_1lb1F00 (F:3-180)
1d: CATH_1lb1H00 (H:3-180)
2a: CATH_1lb1A01 (A:624-816)
2b: CATH_1lb1C01 (C:624-816)
2c: CATH_1lb1E01 (E:624-816)
2d: CATH_1lb1G01 (G:624-816)
3a: CATH_1lb1A02 (A:817-953)
3b: CATH_1lb1C02 (C:817-953)
3c: CATH_1lb1E02 (E:817-953)
3d: CATH_1lb1G02 (G:817-953)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
House mouse (Mus musculus)
(47)
1a
1lb1B00
B:3-180
1b
1lb1D00
D:3-180
1c
1lb1F00
F:3-180
1d
1lb1H00
H:3-180
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Dbl Homology Domain; Chain A
(13)
Homologous Superfamily
:
Dbl Homology Domain; Chain A
(13)
House mouse (Mus musculus)
(7)
2a
1lb1A01
A:624-816
2b
1lb1C01
C:624-816
2c
1lb1E01
E:624-816
2d
1lb1G01
G:624-816
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
PH-domain like
(150)
Homologous Superfamily
:
Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)
(147)
House mouse (Mus musculus)
(39)
3a
1lb1A02
A:817-953
3b
1lb1C02
C:817-953
3c
1lb1E02
E:817-953
3d
1lb1G02
G:817-953
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Pfam Domains
(3, 12)
Info
all PFAM domains
1a: PFAM_Ras_1lb1H01 (H:7-180)
1b: PFAM_Ras_1lb1H02 (H:7-180)
1c: PFAM_Ras_1lb1H03 (H:7-180)
1d: PFAM_Ras_1lb1H04 (H:7-180)
2a: PFAM_PH_1lb1G01 (G:842-946)
2b: PFAM_PH_1lb1G02 (G:842-946)
2c: PFAM_PH_1lb1G03 (G:842-946)
2d: PFAM_PH_1lb1G04 (G:842-946)
3a: PFAM_RhoGEF_1lb1G05 (G:636-811)
3b: PFAM_RhoGEF_1lb1G06 (G:636-811)
3c: PFAM_RhoGEF_1lb1G07 (G:636-811)
3d: PFAM_RhoGEF_1lb1G08 (G:636-811)
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Clan
:
P-loop_NTPase
(1112)
Family
:
Ras
(176)
Homo sapiens (Human)
(141)
1a
Ras-1lb1H01
H:7-180
1b
Ras-1lb1H02
H:7-180
1c
Ras-1lb1H03
H:7-180
1d
Ras-1lb1H04
H:7-180
Clan
:
PH
(111)
Family
:
PH
(71)
Mus musculus (Mouse)
(20)
2a
PH-1lb1G01
G:842-946
2b
PH-1lb1G02
G:842-946
2c
PH-1lb1G03
G:842-946
2d
PH-1lb1G04
G:842-946
Clan
:
no clan defined [family: RhoGEF]
(22)
Family
:
RhoGEF
(22)
Mus musculus (Mouse)
(5)
3a
RhoGEF-1lb1G05
G:636-811
3b
RhoGEF-1lb1G06
G:636-811
3c
RhoGEF-1lb1G07
G:636-811
3d
RhoGEF-1lb1G08
G:636-811
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