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1L9P
Asym. Unit
Info
Asym.Unit (187 KB)
Biol.Unit 1 (181 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NITRITE SOAKED I257G VARIANT OF THE COPPER-CONTAINING NITRITE REDUCTASE FROM ALCALIGENES FAECALIES S-6
Authors
:
M. J. Boulanger, M. E. P. Murphy
Date
:
26 Mar 02 (Deposition) - 04 Feb 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Greek Key Motif, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. J. Boulanger, M. E. P. Murphy
Directing The Mode Of Nitrite Binding To A Copper-Containing Nitrite Reductase From Alcaligenes Faecalis S-6: Characterization Of An Active Site Isoleucine
Protein Sci. V. 12 248 2003
(for further references see the
PDB file header
)
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
1d: COPPER (II) ION (CUd)
1e: COPPER (II) ION (CUe)
1f: COPPER (II) ION (CUf)
2a: NITRITE ION (NO2a)
2b: NITRITE ION (NO2b)
2c: NITRITE ION (NO2c)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CU
6
Ligand/Ion
COPPER (II) ION
2
NO2
3
Ligand/Ion
NITRITE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:95 , CYS A:136 , HIS A:145 , MET A:150
BINDING SITE FOR RESIDUE CU A 501
2
AC2
SOFTWARE
HIS A:100 , HIS A:135 , NO2 A:1504 , HIS B:306
BINDING SITE FOR RESIDUE CU A 502
3
AC3
SOFTWARE
HIS B:95 , CYS B:136 , HIS B:145 , MET B:150
BINDING SITE FOR RESIDUE CU B 501
4
AC4
SOFTWARE
HIS B:100 , HIS B:135 , NO2 B:2504 , HIS C:255 , HIS C:306
BINDING SITE FOR RESIDUE CU B 502
5
AC5
SOFTWARE
HIS C:95 , CYS C:136 , HIS C:145 , MET C:150
BINDING SITE FOR RESIDUE CU C 501
6
AC6
SOFTWARE
HIS A:306 , HIS C:100 , HIS C:135 , NO2 C:3504
BINDING SITE FOR RESIDUE CU C 502
7
AC7
SOFTWARE
ASP A:98 , HIS A:100 , HIS A:135 , CU A:502 , HIS B:255 , HIS B:306 , HOH B:6002
BINDING SITE FOR RESIDUE NO2 A 1504
8
AC8
SOFTWARE
ASP B:98 , HIS B:100 , HIS B:135 , CU B:502 , HIS C:255 , HIS C:306
BINDING SITE FOR RESIDUE NO2 B 2504
9
AC9
SOFTWARE
HIS A:255 , GLY A:257 , HIS A:306 , ASP C:98 , HIS C:100 , HIS C:135 , CU C:502 , HOH C:5531
BINDING SITE FOR RESIDUE NO2 C 3504
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1l9pa1 (A:4-166)
1b: SCOP_d1l9pa2 (A:167-339)
1c: SCOP_d1l9pb1 (B:4-166)
1d: SCOP_d1l9pb2 (B:167-339)
1e: SCOP_d1l9pc1 (C:4-166)
1f: SCOP_d1l9pc2 (C:167-339)
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Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Multidomain cupredoxins
(146)
Protein domain
:
Nitrite reductase, NIR
(79)
Alcaligenes faecalis, strain s-6 [TaxId: 511]
(31)
1a
d1l9pa1
A:4-166
1b
d1l9pa2
A:167-339
1c
d1l9pb1
B:4-166
1d
d1l9pb2
B:167-339
1e
d1l9pc1
C:4-166
1f
d1l9pc2
C:167-339
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1l9pA01 (A:11-158)
1b: CATH_1l9pB01 (B:11-158)
1c: CATH_1l9pC01 (C:11-158)
1d: CATH_1l9pA02 (A:159-325)
1e: CATH_1l9pB02 (B:159-325)
1f: CATH_1l9pC02 (C:159-325)
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Organisms
(
)
(
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Alcaligenes faecalis. Organism_taxid: 511.
(13)
1a
1l9pA01
A:11-158
1b
1l9pB01
B:11-158
1c
1l9pC01
C:11-158
1d
1l9pA02
A:159-325
1e
1l9pB02
B:159-325
1f
1l9pC02
C:159-325
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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