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1L8Y
Asym. Unit
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Asym.Unit (709 KB)
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Models
(30 )
Title
:
SOLUTION STRUCTURE OF HMG BOX 5 IN HUMAN UPSTREAM BINDING FACTOR
Authors
:
W. Yang, Y. Xu, J. Wu, W. Zeng, Y. Shi
Date
:
22 Mar 02 (Deposition) - 05 Jun 02 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (30 x)
Keywords
:
Hubf, Hmg Box 5, Dna Binding Domain, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Yang, Y. Xu, J. Wu, W. Zeng, Y. Shi
Solution Structure And Dna Binding Property Of The Fifth Hmg Box Domain In Comparison With The First Hmg Box Domain In Human Upstream Binding Factor
Biochemistry V. 42 1930 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: HMG_BOX_2 (-|-|-|-|A:4-71|-)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HMG_BOX_2
PS50118
HMG boxes A and B DNA-binding domains profile.
UBF1_HUMAN
112-180
196-264
407-475
298-362
482-549
568-634
1
-
-
-
-
A:4-71
-
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Exons
(3, 3)
Info
All Exons
Exon 1.17 (A:1-27)
Exon 1.18a (A:28-64)
Exon 1.19 (A:65-84)
View:
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All Exon Boundaries
1: Boundary 1.16b/1.17
2: Boundary 1.17/1.18a
3: Boundary 1.18a/1.19
4: Boundary 1.19/1.20b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000302904
1
ENSE00002185963
chr17:
42298994-42298569
426
UBF1_HUMAN
-
0
0
-
-
1.5b
ENST00000302904
5b
ENSE00001386283
chr17:
42295664-42295540
125
UBF1_HUMAN
1-20
20
0
-
-
1.6
ENST00000302904
6
ENSE00000854250
chr17:
42294072-42293897
176
UBF1_HUMAN
20-78
59
0
-
-
1.7
ENST00000302904
7
ENSE00000854248
chr17:
42293357-42293274
84
UBF1_HUMAN
79-106
28
0
-
-
1.8
ENST00000302904
8
ENSE00000854247
chr17:
42293177-42293022
156
UBF1_HUMAN
107-158
52
0
-
-
1.9c
ENST00000302904
9c
ENSE00000854246
chr17:
42290650-42290586
65
UBF1_HUMAN
159-180
22
0
-
-
1.10
ENST00000302904
10
ENSE00000854245
chr17:
42290307-42290187
121
UBF1_HUMAN
180-220
41
0
-
-
1.11a
ENST00000302904
11a
ENSE00000732399
chr17:
42289822-42289712
111
UBF1_HUMAN
221-257
37
0
-
-
1.12
ENST00000302904
12
ENSE00000854244
chr17:
42289374-42289241
134
UBF1_HUMAN
258-302
45
0
-
-
1.13
ENST00000302904
13
ENSE00000732403
chr17:
42289115-42288974
142
UBF1_HUMAN
302-349
48
0
-
-
1.14
ENST00000302904
14
ENSE00000854242
chr17:
42288699-42288658
42
UBF1_HUMAN
350-363
14
0
-
-
1.15
ENST00000302904
15
ENSE00000854241
chr17:
42288520-42288407
114
UBF1_HUMAN
364-401
38
0
-
-
1.16b
ENST00000302904
16b
ENSE00000732411
chr17:
42288315-42288160
156
UBF1_HUMAN
402-453
52
0
-
-
1.17
ENST00000302904
17
ENSE00000732414
chr17:
42287841-42287686
156
UBF1_HUMAN
454-505
52
1
A:1-27
27
1.18a
ENST00000302904
18a
ENSE00000854238
chr17:
42287602-42287492
111
UBF1_HUMAN
506-542
37
1
A:28-64
37
1.19
ENST00000302904
19
ENSE00000854237
chr17:
42287101-42287013
89
UBF1_HUMAN
543-572
30
1
A:65-84
20
1.20b
ENST00000302904
20b
ENSE00000854236
chr17:
42286909-42286720
190
UBF1_HUMAN
572-635
64
0
-
-
1.22
ENST00000302904
22
ENSE00000854235
chr17:
42285279-42285232
48
UBF1_HUMAN
636-651
16
0
-
-
1.23b
ENST00000302904
23b
ENSE00000854232
chr17:
42285138-42285067
72
UBF1_HUMAN
652-675
24
0
-
-
1.24b
ENST00000302904
24b
ENSE00001136316
chr17:
42284965-42284822
144
UBF1_HUMAN
676-723
48
0
-
-
1.25f
ENST00000302904
25f
ENSE00001136432
chr17:
42284735-42282401
2335
UBF1_HUMAN
724-764
41
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1l8ya_ (A:)
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Class
:
All alpha proteins
(14657)
Fold
:
HMG-box
(49)
Superfamily
:
HMG-box
(49)
Family
:
HMG-box
(43)
Protein domain
:
Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1)
(6)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1l8ya_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1l8yA00 (A:1-84)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
DNA Binding (I), subunit A
(33)
Homologous Superfamily
:
DNA Binding (I), subunit A
(33)
Human (Homo sapiens)
(7)
1a
1l8yA00
A:1-84
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Pfam Domains
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Chain A
Asymmetric Unit 1
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