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1L8X
Asym. Unit
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Asym.Unit (120 KB)
Biol.Unit 1 (115 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FERROCHELATASE FROM THE YEAST, SACCHAROMYCES CEREVISIAE, WITH COBALT(II) AS THE SUBSTRATE ION
Authors
:
T. Karlberg, D. Lecerof, M. Gora, G. Silvegren, R. Labbe-Bois, M. Hansson, S. Al-Karadaghi
Date
:
22 Mar 02 (Deposition) - 20 Nov 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Ferrochelatase, Heme Biosynthesis, Protoheme, Ferro-Lyase, Porphyrin Metallation, Cobalt, Mitochondrial Inner Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Karlberg, D. Lecerof, M. Gora, G. Silvegren, R. Labbe-Bois, M. Hansson, S. Al-Karadaghi
Metal Binding To Saccharomyces Cerevisiae Ferrochelatase
Biochemistry V. 41 13499 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: COBALT (II) ION (COa)
1b: COBALT (II) ION (COb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CO
2
Ligand/Ion
COBALT (II) ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:235
BINDING SITE FOR RESIDUE CO A 501
2
AC2
SOFTWARE
HIS B:235 , GLU B:314
BINDING SITE FOR RESIDUE CO B 502
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: FERROCHELATASE (A:230-250,B:230-250)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FERROCHELATASE
PS00534
Ferrochelatase signature.
HEMH_YEAST
230-250
2
A:230-250
B:230-250
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Exons
(1, 2)
Info
All Exons
Exon 1.1 (A:37-391 | B:38-391)
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1: Boundary -/1.1
2: Boundary 1.1/-
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ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YOR176W
1
YOR176W.1
XV:662402-663583
1182
HEMH_YEAST
1-393
393
2
A:37-391
B:38-391
355
354
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1l8xa_ (A:)
1b: SCOP_d1l8xb_ (B:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Chelatase-like
(149)
Superfamily
:
Chelatase
(46)
Family
:
Ferrochelatase
(37)
Protein domain
:
Ferrochelatase
(34)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(2)
1a
d1l8xa_
A:
1b
d1l8xb_
B:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1l8xA02 (A:200-338)
1b: CATH_1l8xB02 (B:200-338)
1c: CATH_1l8xB01 (B:38-199,B:339-391)
1d: CATH_1l8xA01 (A:37-199,A:339-391)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1400, no name defined]
(36)
Baker's yeast (Saccharomyces cerevisiae)
(2)
1a
1l8xA02
A:200-338
1b
1l8xB02
B:200-338
1c
1l8xB01
B:38-199,B:339-391
1d
1l8xA01
A:37-199,A:339-391
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Ferrochelatase_1l8xB01 (B:38-357)
1b: PFAM_Ferrochelatase_1l8xB02 (B:38-357)
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Clan
:
Chelatase
(20)
Family
:
Ferrochelatase
(12)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(2)
1a
Ferrochelatase-1l8xB01
B:38-357
1b
Ferrochelatase-1l8xB02
B:38-357
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