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1L8J
Asym. Unit
Info
Asym.Unit (40 KB)
Biol.Unit 1 (35 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ENDOTHELIAL PROTEIN C RECEPTOR AND BOUND PHOSPHOLIPID MOLECULE
Authors
:
V. Oganesyan, N. Oganesyan, S. Terzyan, Q. Dongfeng, Z. Dauter, N. L. Es C. T. Esmon
Date
:
20 Mar 02 (Deposition) - 26 Jun 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Protein-Lipid Complex, Glycosilation, Mhc Class1, Hydrophobic Groove, Blood Clotting
(Keyword Search:
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)
Reference
:
V. Oganesyan, N. Oganesyan, S. Terzyan, D. Qu, Z. Dauter, N. L. Esmon, C. T. Esmon
The Crystal Structure Of The Endothelial Protein C Receptor And A Bound Phospholipid.
J. Biol. Chem. V. 277 24851 2002
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
2b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
3a: PHOSPHATIDYLETHANOLAMINE (PTYa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
NDG
2
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
3
PTY
1
Ligand/Ion
PHOSPHATIDYLETHANOLAMINE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:12 , ASN A:30 , ALA A:31 , SER A:32 , LEU A:37 , NAG A:195 , HOH A:260 , HOH A:280 , HOH A:300
BINDING SITE FOR RESIDUE NAG A 194
2
AC2
SOFTWARE
NAG A:194 , HOH A:295
BINDING SITE FOR RESIDUE NAG A 195
3
AC3
SOFTWARE
ALA A:90 , PRO A:92 , ASN A:119 , NAG A:199 , HOH A:264
BINDING SITE FOR RESIDUE NAG A 198
4
AC4
SOFTWARE
PRO A:92 , NAG A:198 , HOH A:245
BINDING SITE FOR RESIDUE NAG A 199
5
AC5
SOFTWARE
LEU A:11 , LEU A:14 , GLN A:15 , HIS A:39 , LEU A:41 , GLY A:68 , LEU A:69 , TYR A:72 , PHE A:76 , LEU A:151 , THR A:157 , GLU A:160 , LEU A:161 , GLU A:163 , PHE A:164 , THR A:168 , TYR A:172 , HOH A:286
BINDING SITE FOR RESIDUE PTY A 200
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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End label:
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Exons
(2, 2)
Info
All Exons
Exon 1.4 (A:8-91)
Exon 1.5 (A:91-177)
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All Exon Boundaries
1: Boundary 1.3a/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/1.6a
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000216968
3a
ENSE00001463636
chr20:
33759774-33760027
254
EPCR_HUMAN
1-24
24
0
-
-
1.4
ENST00000216968
4
ENSE00000661565
chr20:
33762505-33762756
252
EPCR_HUMAN
24-108
85
1
A:8-91
84
1.5
ENST00000216968
5
ENSE00000661566
chr20:
33763971-33764249
279
EPCR_HUMAN
108-201
94
1
A:91-177
87
1.6a
ENST00000216968
6a
ENSE00001463602
chr20:
33764501-33765164
664
EPCR_HUMAN
201-238
38
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1l8ja_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Endothelial protein C receptor
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1l8ja_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1l8jA00 (A:8-177)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
Human (Homo sapiens)
(249)
1a
1l8jA00
A:8-177
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_MHC_I_1l8jA01 (A:53-177)
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Clan
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MHC
(252)
Family
:
MHC_I
(210)
Homo sapiens (Human)
(144)
1a
MHC_I-1l8jA01
A:53-177
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Chain A
Asymmetric Unit 1
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