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1L8D
Asym. Unit
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Asym.Unit (43 KB)
Biol.Unit 1 (39 KB)
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(1)
Title
:
RAD50 COILED-COIL ZN HOOK
Authors
:
K. P. Hopfner, J. A. Tainer
Date
:
20 Mar 02 (Deposition) - 28 Aug 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Zinc Finger, Rad50, Dna Repair, Recombination, Hook Motif, Replication
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. P. Hopfner, L. Craig, G. Moncalian, R. A. Zinkel, T. Usui, B. A. Owen, A. Karcher, B. Henderson, J. L. Bodmer, C. T. Mcmurray, J. P. Carney, J. H. Petrini, J. A. Tainer
The Rad50 Zinc-Hook Is A Structure Joining Mre11 Complexes In Dna Recombination And Repair.
Nature V. 418 562 2002
(for further references see the
PDB file header
)
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
2a: MERCURY (II) ION (HGa)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
3e: PHOSPHATE ION (PO4e)
3f: PHOSPHATE ION (PO4f)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CIT
1
Ligand/Ion
CITRIC ACID
2
HG
1
Ligand/Ion
MERCURY (II) ION
3
PO4
6
Ligand/Ion
PHOSPHATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:444 , CYS A:447 , CYS B:444 , CYS B:447
BINDING SITE FOR RESIDUE HG A 201
2
AC2
SOFTWARE
ARG B:449
BINDING SITE FOR RESIDUE PO4 B 301
3
AC3
SOFTWARE
CIT A:507
BINDING SITE FOR RESIDUE PO4 A 302
4
AC4
SOFTWARE
HOH A:82 , HOH A:109 , LYS A:441 , ASP A:453 , ARG A:456
BINDING SITE FOR RESIDUE PO4 A 303
5
AC5
SOFTWARE
ARG A:456 , GLU A:457 , LEU A:460
BINDING SITE FOR RESIDUE PO4 A 304
6
AC6
SOFTWARE
LYS A:431 , THR A:432 , GLU A:435
BINDING SITE FOR RESIDUE PO4 A 305
7
AC7
SOFTWARE
GLU A:403 , ARG B:413 , LYS B:481 , GLU B:485
BINDING SITE FOR RESIDUE PO4 A 306
8
AC8
SOFTWARE
HOH A:69 , PO4 A:302 , LYS A:406 , GLU A:410 , ARG A:413 , LEU A:488 , GLU B:403 , LYS B:406 , ILE B:495
BINDING SITE FOR RESIDUE CIT A 507
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ZN_HOOK (A:399-496,B:399-496)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZN_HOOK
PS51131
Rad50 zinc-hook domain profile.
RAD50_PYRFU
399-496
2
A:399-496
B:399-496
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1l8da_ (A:)
1b: SCOP_d1l8db_ (B:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Coiled coil proteins
(689)
Fold
:
Antiparallel coiled-coil
(45)
Superfamily
:
Rad50 coiled-coil Zn hook
(1)
Family
:
Rad50 coiled-coil Zn hook
(1)
Protein domain
:
Rad50 coiled-coil Zn hook
(1)
Pyrococcus furiosus [TaxId: 2261]
(1)
1a
d1l8da_
A:
1b
d1l8db_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1l8dA00 (A:396-498)
1b: CATH_1l8dB00 (B:395-496)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
Helix hairpin bin
(1)
Pyrococcus furiosus. Organism_taxid: 2261.
(1)
1a
1l8dA00
A:396-498
1b
1l8dB00
B:395-496
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Rad50_zn_hook_1l8dB01 (B:422-475)
1b: PFAM_Rad50_zn_hook_1l8dB02 (B:422-475)
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)
Clan
:
no clan defined [family: Rad50_zn_hook]
(1)
Family
:
Rad50_zn_hook
(1)
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
(1)
1a
Rad50_zn_hook-1l8dB01
B:422-475
1b
Rad50_zn_hook-1l8dB02
B:422-475
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