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1L7D
Asym. Unit
Info
Asym.Unit (233 KB)
Biol.Unit 1 (115 KB)
Biol.Unit 2 (117 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF R. RUBRUM TRANSHYDROGENASE DOMAIN I WITHOUT BOUND NAD(H)
Authors
:
G. S. Prasad, M. Wahlberg, V. Sridhar, M. Yamaguchi, Y. Hatefi, C. D. Stout
Date
:
14 Mar 02 (Deposition) - 20 Nov 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.81
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Transhydrogenase Domain I, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. S. Prasad, M. Wahlberg, V. Sridhar, M. Yamaguchi, Y. Hatefi, C. D. Stout
Crystal Structures Of Transhydrogenase Domain I With And Without Bound Nadh
Biochemistry V. 41 12745 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: ALADH_PNT_1 (A:4-30,B:404-430,C:804-830,D:1204-...)
2: ALADH_PNT_2 (A:177-202,B:577-602,C:977-1002,D:1...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALADH_PNT_1
PS00836
Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1.
PNTAA_RHORT
4-30
4
A:4-30
B:404-430
C:804-830
D:1204-1230
PNTAA_RHORU
4-30
4
A:4-30
B:404-430
C:804-830
D:1204-1230
2
ALADH_PNT_2
PS00837
Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2.
PNTAA_RHORT
177-202
4
A:177-202
B:577-602
C:977-1002
D:1377-1402
PNTAA_RHORU
177-202
4
A:177-202
B:577-602
C:977-1002
D:1377-1402
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1l7da2 (A:1-143,A:327-377)
1b: SCOP_d1l7db2 (B:401-543,B:727-783)
1c: SCOP_d1l7dc2 (C:801-943,C:1127-1178)
1d: SCOP_d1l7dd2 (D:1201-1343,D:1527-1577)
2a: SCOP_d1l7da1 (A:144-326)
2b: SCOP_d1l7db1 (B:544-726)
2c: SCOP_d1l7dc1 (C:944-1126)
2d: SCOP_d1l7dd1 (D:1344-1526)
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Protein Domains
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)
(
)
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)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Formate/glycerate dehydrogenase catalytic domain-like
(49)
Family
:
L-alanine dehydrogenase-like
(18)
Protein domain
:
Nicotinamide nucleotide transhydrogenase dI component
(15)
Rhodospirillum rubrum [TaxId: 1085]
(15)
1a
d1l7da2
A:1-143,A:327-377
1b
d1l7db2
B:401-543,B:727-783
1c
d1l7dc2
C:801-943,C:1127-1178
1d
d1l7dd2
D:1201-1343,D:1527-1577
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Formate/glycerate dehydrogenases, NAD-domain
(49)
Protein domain
:
Nicotinamide nucleotide transhydrogenase dI component
(15)
Rhodospirillum rubrum [TaxId: 1085]
(15)
2a
d1l7da1
A:144-326
2b
d1l7db1
B:544-726
2c
d1l7dc1
C:944-1126
2d
d1l7dd1
D:1344-1526
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1l7dA02 (A:2-143,A:327-372)
1b: CATH_1l7dB02 (B:402-543,B:727-772)
1c: CATH_1l7dC02 (C:802-943,C:1127-1172)
1d: CATH_1l7dD02 (D:1202-1343,D:1527-1572)
2a: CATH_1l7dA01 (A:144-326)
2b: CATH_1l7dC01 (C:944-1126)
2c: CATH_1l7dD01 (D:1344-1526)
2d: CATH_1l7dB01 (B:544-726)
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Organisms
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1770, no name defined]
(22)
Rhodospirillum rubrum. Organism_taxid: 1085.
(3)
1a
1l7dA02
A:2-143,A:327-372
1b
1l7dB02
B:402-543,B:727-772
1c
1l7dC02
C:802-943,C:1127-1172
1d
1l7dD02
D:1202-1343,D:1527-1572
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Rhodospirillum rubrum. Organism_taxid: 1085.
(3)
2a
1l7dA01
A:144-326
2b
1l7dC01
C:944-1126
2c
1l7dD01
D:1344-1526
2d
1l7dB01
B:544-726
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_AlaDh_PNT_N_1l7dD01 (D:1204-1344)
1b: PFAM_AlaDh_PNT_N_1l7dD02 (D:1204-1344)
1c: PFAM_AlaDh_PNT_N_1l7dD03 (D:1204-1344)
1d: PFAM_AlaDh_PNT_N_1l7dD04 (D:1204-1344)
2a: PFAM_AlaDh_PNT_C_1l7dD05 (D:1353-1519)
2b: PFAM_AlaDh_PNT_C_1l7dD06 (D:1353-1519)
2c: PFAM_AlaDh_PNT_C_1l7dD07 (D:1353-1519)
2d: PFAM_AlaDh_PNT_C_1l7dD08 (D:1353-1519)
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Clan
:
Form_Glyc_dh
(56)
Family
:
AlaDh_PNT_N
(24)
Rhodospirillum rubrum
(9)
1a
AlaDh_PNT_N-1l7dD01
D:1204-1344
1b
AlaDh_PNT_N-1l7dD02
D:1204-1344
1c
AlaDh_PNT_N-1l7dD03
D:1204-1344
1d
AlaDh_PNT_N-1l7dD04
D:1204-1344
Clan
:
NADP_Rossmann
(1239)
Family
:
AlaDh_PNT_C
(25)
Rhodospirillum rubrum
(9)
2a
AlaDh_PNT_C-1l7dD05
D:1353-1519
2b
AlaDh_PNT_C-1l7dD06
D:1353-1519
2c
AlaDh_PNT_C-1l7dD07
D:1353-1519
2d
AlaDh_PNT_C-1l7dD08
D:1353-1519
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Asym.Unit (233 KB)
Header - Asym.Unit
Biol.Unit 1 (115 KB)
Header - Biol.Unit 1
Biol.Unit 2 (117 KB)
Header - Biol.Unit 2
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