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1L5V
Asym. Unit
Info
Asym.Unit (289 KB)
Biol.Unit 1 (283 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE MALTODEXTRIN PHOSPHORYLASE COMPLEXED WITH GLUCOSE-1-PHOSPHATE
Authors
:
S. Geremia, M. Campagnolo, R. Schinzel, L. N. Johnson
Date
:
08 Mar 02 (Deposition) - 10 Apr 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Phosphorylase, Enzymatic Catalysis, Substrate Complex, Transferase
(Keyword Search:
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Reference
:
S. Geremia, M. Campagnolo, R. Schinzel, L. N. Johnson
Enzymatic Catalysis In Crystals Of Escherichia Coli Maltodextrin Phosphorylase
J. Mol. Biol. V. 322 413 2002
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: ALPHA-D-GLUCOSE-1-PHOSPHATE (G1Pa)
1b: ALPHA-D-GLUCOSE-1-PHOSPHATE (G1Pb)
2a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
2b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
3a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
3b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
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Label:
No.
Name
Count
Type
Full Name
1
G1P
2
Ligand/Ion
ALPHA-D-GLUCOSE-1-PHOSPHATE
2
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
3
TRS
2
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:114 , LEU A:115 , HIS A:345 , ASN A:449 , ARG A:534 , TYR A:538 , GLU A:637 , ALA A:638 , SER A:639 , GLY A:640 , TRS A:990 , HOH A:1012 , HOH A:1079 , HOH A:1230 , HOH A:1247 , HOH A:1256 , HOH A:1338
BINDING SITE FOR RESIDUE G1P A 900
2
AC2
SOFTWARE
GLY B:114 , LEU B:115 , HIS B:345 , ASN B:449 , ARG B:534 , TYR B:538 , GLU B:637 , ALA B:638 , SER B:639 , GLY B:640 , TRS B:991 , HOH B:1034 , HOH B:1101 , HOH B:1252 , HOH B:1269 , HOH B:1278 , HOH B:1360
BINDING SITE FOR RESIDUE G1P B 901
3
AC3
SOFTWARE
GLU A:67 , ASN A:112 , TYR A:256 , ASP A:307 , HIS A:309 , HIS A:345 , THR A:346 , ARG A:534 , G1P A:900 , HOH A:1256 , HOH A:1414 , HOH A:1438
BINDING SITE FOR RESIDUE TRS A 990
4
AC4
SOFTWARE
ARG A:117 , TRP A:456 , ILE A:532 , LYS A:533 , LYS A:539 , TYR A:613 , CYS A:614 , VAL A:615 , GLY A:640 , THR A:641 , GLY A:642 , LYS A:645 , HOH A:1024 , HOH A:1048 , HOH A:1094 , HOH A:1177 , HOH A:1230 , HOH A:1247
BINDING SITE FOR RESIDUE PLP A 999
5
AC5
SOFTWARE
GLU B:67 , ASN B:112 , LEU B:115 , TYR B:256 , ASP B:307 , HIS B:309 , HIS B:345 , THR B:346 , G1P B:901 , HOH B:1278 , HOH B:1435 , HOH B:1458
BINDING SITE FOR RESIDUE TRS B 991
6
AC6
SOFTWARE
GLY B:113 , GLY B:114 , ARG B:117 , TRP B:456 , ILE B:532 , LYS B:533 , LYS B:539 , TYR B:613 , CYS B:614 , VAL B:615 , GLY B:640 , THR B:641 , GLY B:642 , LYS B:645 , HOH B:1046 , HOH B:1070 , HOH B:1116 , HOH B:1199 , HOH B:1252 , HOH B:1269
BINDING SITE FOR RESIDUE PLP B 999
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PHOSPHORYLASE (A:637-649,B:637-649)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PHOSPHORYLASE
PS00102
Phosphorylase pyridoxal-phosphate attachment site.
PHSM_ECOLI
638-650
2
A:637-649
B:637-649
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1l5va_ (A:)
1b: SCOP_d1l5vb_ (B:)
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Protein Domains
(
)
(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
UDP-Glycosyltransferase/glycogen phosphorylase
(296)
Superfamily
:
UDP-Glycosyltransferase/glycogen phosphorylase
(296)
Family
:
Oligosaccharide phosphorylase
(199)
Protein domain
:
Maltodextrin phosphorylase (MALP)
(7)
Escherichia coli [TaxId: 562]
(7)
1a
d1l5va_
A:
1b
d1l5vb_
B:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1l5vA02 (A:451-779)
1b: CATH_1l5vB02 (B:451-779)
1c: CATH_1l5vA01 (A:1-450,A:780-796)
1d: CATH_1l5vB01 (B:1-450,B:780-796)
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Organisms
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)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Glycogen Phosphorylase B;
(202)
Escherichia coli. Organism_taxid: 562.
(7)
1a
1l5vA02
A:451-779
1b
1l5vB02
B:451-779
1c
1l5vA01
A:1-450,A:780-796
1d
1l5vB01
B:1-450,B:780-796
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Phosphorylase_1l5vB01 (B:90-796)
1b: PFAM_Phosphorylase_1l5vB02 (B:90-796)
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Clan
:
GT-B
(132)
Family
:
Phosphorylase
(83)
Escherichia coli (strain K12)
(3)
1a
Phosphorylase-1l5vB01
B:90-796
1b
Phosphorylase-1l5vB02
B:90-796
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Asymmetric Unit 1
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Asym.Unit (289 KB)
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