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1L5T
Asym. Unit
Info
Asym.Unit (110 KB)
Biol.Unit 1 (55 KB)
Biol.Unit 2 (55 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A DOMAIN-OPENED MUTANT (R121D) OF THE HUMAN LACTOFERRIN N-LOBE REFINED FROM A MEROHEDRALLY-TWINNED CRYSTAL FORM.
Authors
:
G. B. Jameson, B. F. Anderson, W. A. Breyer, J. W. Tweedie, E. N. Baker
Date
:
07 Mar 02 (Deposition) - 27 Mar 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Iron Transport, Glycoprotein, Lactoferrin, N-Lobe, Iron- Release, Twinning, Metal Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. B. Jameson, B. F. Anderson, W. A. Breyer, C. L. Day, J. W. Tweedie, E. N. Baker
Structure Of A Domain-Opened Mutant (R121D) Of The Human Lactoferrin N-Lobe Refined From A Merohedrally Twinned Crystal Form.
Acta Crystallogr. , Sect. D V. 58 955 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_013504 (A10T, chain A/B, )
2: VAR_013505 (K28R, chain A/B, )
3: VAR_013506 (I129T, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_013504
A
29
T
TRFL_HUMAN
Polymorphism
1126477
A/B
A
10
T
2
UniProt
VAR_013505
K
47
R
TRFL_HUMAN
Polymorphism
1126478
A/B
K
28
R
3
UniProt
VAR_013506
I
148
T
TRFL_HUMAN
Polymorphism
1126479
A/B
I
129
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(4, 8)
Info
All PROSITE Patterns/Profiles
1: TRANSFERRIN_LIKE_4 (A:6-332,B:6-332|-)
2: TRANSFERRIN_LIKE_1 (A:92-101,B:92-101|-)
3: TRANSFERRIN_LIKE_2 (A:192-208,B:192-208|-)
4: TRANSFERRIN_LIKE_3 (A:226-256,B:226-256|-)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRANSFERRIN_LIKE_4
PS51408
Transferrin-like domain profile.
TRFL_HUMAN
25-352
364-695
2
A:6-332
B:6-332
-
2
TRANSFERRIN_LIKE_1
PS00205
Transferrin-like domain signature 1.
TRFL_HUMAN
111-120
454-463
2
A:92-101
B:92-101
-
3
TRANSFERRIN_LIKE_2
PS00206
Transferrin-like domain signature 2.
TRFL_HUMAN
211-227
547-563
2
A:192-208
B:192-208
-
4
TRANSFERRIN_LIKE_3
PS00207
Transferrin-like domain signature 3.
TRFL_HUMAN
245-275
589-619
2
A:226-256
B:226-256
-
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Exons
(7, 14)
Info
All Exons
Exon 1.8b (A:4-50 | B:4-50)
Exon 1.9 (A:51-87 | B:51-87)
Exon 1.10a (A:87-148 | B:87-148)
Exon 1.12b (A:148-197 | B:148-197)
Exon 1.13a (A:197-216 | B:197-216)
Exon 1.14 (A:216-275 | B:216-275)
Exon 1.15 (A:276-332 | B:276-332)
View:
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All Exon Boundaries
1: Boundary 1.5a/1.8b
2: Boundary 1.8b/1.9
3: Boundary 1.9/1.10a
4: Boundary 1.10a/1.12b
5: Boundary 1.12b/1.13a
6: Boundary 1.13a/1.14
7: Boundary 1.14/1.15
8: Boundary 1.15/1.16b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.5a
ENST00000231751
5a
ENSE00001814982
chr3:
46506653-46506315
339
TRFL_HUMAN
1-15
15
0
-
-
1.8b
ENST00000231751
8b
ENSE00001591766
chr3:
46501309-46501146
164
TRFL_HUMAN
15-69
55
2
A:4-50
B:4-50
47
47
1.9
ENST00000231751
9
ENSE00001078630
chr3:
46497888-46497780
109
TRFL_HUMAN
70-106
37
2
A:51-87
B:51-87
37
37
1.10a
ENST00000231751
10a
ENSE00002201536
chr3:
46497468-46497286
183
TRFL_HUMAN
106-167
62
2
A:87-148
B:87-148
62
62
1.12b
ENST00000231751
12b
ENSE00001078629
chr3:
46496932-46496785
148
TRFL_HUMAN
167-216
50
2
A:148-197
B:148-197
50
50
1.13a
ENST00000231751
13a
ENSE00000825947
chr3:
46495850-46495795
56
TRFL_HUMAN
216-235
20
2
A:197-216
B:197-216
20
20
1.14
ENST00000231751
14
ENSE00000825946
chr3:
46492163-46491985
179
TRFL_HUMAN
235-294
60
2
A:216-275
B:216-275
60
60
1.15
ENST00000231751
15
ENSE00000767141
chr3:
46491518-46491344
175
TRFL_HUMAN
295-353
59
2
A:276-332
B:276-332
57
57
1.16b
ENST00000231751
16b
ENSE00000767140
chr3:
46490508-46490354
155
TRFL_HUMAN
353-404
52
0
-
-
1.17
ENST00000231751
17
ENSE00000492524
chr3:
46488889-46488799
91
TRFL_HUMAN
405-435
31
0
-
-
1.18
ENST00000231751
18
ENSE00000767138
chr3:
46487984-46487931
54
TRFL_HUMAN
435-453
19
0
-
-
1.19
ENST00000231751
19
ENSE00000492526
chr3:
46486927-46486772
156
TRFL_HUMAN
453-505
53
0
-
-
1.20
ENST00000231751
20
ENSE00000492527
chr3:
46485073-46484932
142
TRFL_HUMAN
505-552
48
0
-
-
1.22a
ENST00000231751
22a
ENSE00000767135
chr3:
46482974-46482907
68
TRFL_HUMAN
552-575
24
0
-
-
1.23a
ENST00000231751
23a
ENSE00001292001
chr3:
46480971-46480787
185
TRFL_HUMAN
575-636
62
0
-
-
1.24c
ENST00000231751
24c
ENSE00000825945
chr3:
46479620-46479431
190
TRFL_HUMAN
637-700
64
0
-
-
1.25c
ENST00000231751
25c
ENSE00001289842
chr3:
46477720-46477136
585
TRFL_HUMAN
700-710
11
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1l5ta_ (A:)
1b: SCOP_d1l5tb_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Transferrin
(82)
Protein domain
:
Lactoferrin
(42)
Human (Homo sapiens) [TaxId: 9606]
(22)
1a
d1l5ta_
A:
1b
d1l5tb_
B:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1l5tA02 (A:82-253,A:317-327)
1b: CATH_1l5tB02 (B:82-253,B:317-327)
1c: CATH_1l5tA01 (A:4-81,A:254-316)
1d: CATH_1l5tB01 (B:4-81,B:254-316)
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)
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)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Human (Homo sapiens)
(55)
1a
1l5tA02
A:82-253,A:317-327
1b
1l5tB02
B:82-253,B:317-327
1c
1l5tA01
A:4-81,A:254-316
1d
1l5tB01
B:4-81,B:254-316
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Transferrin_1l5tB01 (B:6-332)
1b: PFAM_Transferrin_1l5tB02 (B:6-332)
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Clans
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(
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(
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Organisms
(
)
(
)
Clan
:
PBP
(391)
Family
:
Transferrin
(53)
Homo sapiens (Human)
(23)
1a
Transferrin-1l5tB01
B:6-332
1b
Transferrin-1l5tB02
B:6-332
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