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1L5J
Asym. Unit
Info
Asym.Unit (283 KB)
Biol.Unit 1 (142 KB)
Biol.Unit 2 (141 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E. COLI ACONITASE B.
Authors
:
C. H. Williams, T. J. Stillman, V. V. Barynin, S. E. Sedelnikova, Y. Tang, J. Green, J. R. Guest, P. J. Artymiuk
Date
:
07 Mar 02 (Deposition) - 12 Jun 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Molecular Recognition, Rna Binding, Citric Acid Cycle, Heat- Like Domain, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. H. Williams, T. J. Stillman, V. V. Barynin, S. E. Sedelnikova, Y. Tang, J. Green, J. R. Guest, P. J. Artymiuk
E. Coli Aconitase B Structure Reveals A Heat-Like Domain With Implications For Protein-Protein Recognition.
Nat. Struct. Biol. V. 9 447 2002
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: FE3-S4 CLUSTER (F3Sa)
1b: FE3-S4 CLUSTER (F3Sb)
2a: ACONITATE ION (TRAa)
2b: ACONITATE ION (TRAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
F3S
2
Ligand/Ion
FE3-S4 CLUSTER
2
TRA
2
Ligand/Ion
ACONITATE ION
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:191 , SER A:244 , SER A:245 , ARG A:246 , GLN A:414 , THR A:416 , THR A:417 , ASP A:497 , SER A:498 , MET A:773 , ARG A:791 , ARG A:796 , F3S A:868
BINDING SITE FOR RESIDUE TRA A 866
2
AC2
SOFTWARE
ARG B:191 , SER B:244 , SER B:245 , ARG B:246 , GLN B:414 , THR B:416 , THR B:417 , ASP B:497 , SER B:498 , ARG B:791 , ARG B:796 , F3S B:869
BINDING SITE FOR RESIDUE TRA B 867
3
AC3
SOFTWARE
HIS A:444 , HIS A:480 , HIS A:499 , SER A:709 , CYS A:710 , CYS A:769 , CYS A:772 , THR A:790 , TRA A:866 , HOH A:874
BINDING SITE FOR RESIDUE F3S A 868
4
AC4
SOFTWARE
HIS B:444 , HIS B:480 , HIS B:499 , SER B:709 , CYS B:710 , CYS B:769 , CYS B:772 , THR B:790 , TRA B:867
BINDING SITE FOR RESIDUE F3S B 869
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: ACONITASE_1 (A:702-719,B:702-719)
2: ACONITASE_2 (A:761-774,B:761-774)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACONITASE_1
PS00450
Aconitase family signature 1.
ACNB_ECOLI
702-719
2
A:702-719
B:702-719
2
ACONITASE_2
PS01244
Aconitase family signature 2.
ACNB_ECOLI
761-774
2
A:761-774
B:761-774
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1l5ja1 (A:1-160)
1b: SCOP_d1l5jb1 (B:1-160)
2a: SCOP_d1l5ja3 (A:373-862)
2b: SCOP_d1l5jb3 (B:373-862)
3a: SCOP_d1l5ja2 (A:161-372)
3b: SCOP_d1l5jb2 (B:161-372)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
Aconitase B, N-terminal domain
(1)
Family
:
Aconitase B, N-terminal domain
(1)
Protein domain
:
Aconitase B, N-terminal domain
(1)
Escherichia coli [TaxId: 562]
(1)
1a
d1l5ja1
A:1-160
1b
d1l5jb1
B:1-160
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Aconitase iron-sulfur domain
(20)
Superfamily
:
Aconitase iron-sulfur domain
(20)
Family
:
Aconitase iron-sulfur domain
(20)
Protein domain
:
Aconitase B, C-terminal domain
(1)
Escherichia coli [TaxId: 562]
(1)
2a
d1l5ja3
A:373-862
2b
d1l5jb3
B:373-862
Fold
:
The swivelling beta/beta/alpha domain
(136)
Superfamily
:
LeuD/IlvD-like
(25)
Family
:
LeuD-like
(19)
Protein domain
:
Aconitase B, second N-terminal domain
(1)
Escherichia coli [TaxId: 562]
(1)
3a
d1l5ja2
A:161-372
3b
d1l5jb2
B:161-372
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CATH Domains
(3, 8)
Info
all CATH domains
1a: CATH_1l5jA05 (A:683-862)
1b: CATH_1l5jB05 (B:683-862)
1c: CATH_1l5jA04 (A:402-529)
1d: CATH_1l5jB04 (B:402-529)
2a: CATH_1l5jA03 (A:382-401,A:530-682)
2b: CATH_1l5jB03 (B:382-401,B:530-682)
3a: CATH_1l5jA02 (A:162-361)
3b: CATH_1l5jB02 (B:162-361)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Aconitase; domain 3
(16)
Homologous Superfamily
:
Aconitase, domain 3
(16)
Escherichia coli. Organism_taxid: 562.
(1)
1a
1l5jA05
A:683-862
1b
1l5jB05
B:683-862
1c
1l5jA04
A:402-529
1d
1l5jB04
B:402-529
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aconitase; Domain 2
(16)
Homologous Superfamily
:
Aconitase, Domain 2
(16)
Escherichia coli. Organism_taxid: 562.
(1)
2a
1l5jA03
A:382-401,A:530-682
2b
1l5jB03
B:382-401,B:530-682
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
Aconitase; domain 4
(16)
Homologous Superfamily
:
Aconitase, domain 4
(16)
Escherichia coli. Organism_taxid: 562.
(1)
3a
1l5jA02
A:162-361
3b
1l5jB02
B:162-361
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (283 KB)
Header - Asym.Unit
Biol.Unit 1 (142 KB)
Header - Biol.Unit 1
Biol.Unit 2 (141 KB)
Header - Biol.Unit 2
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