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1L5H
Biol. Unit 1
Info
Asym.Unit (161 KB)
Biol.Unit 1 (306 KB)
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(1)
Title
:
FEMO-COFACTOR DEFICIENT NITROGENASE MOFE PROTEIN
Authors
:
B. Schmid, M. W. Ribbe, O. Einsle, M. Yoshida, L. M. Thomas, D. R. Dean, D. B. K. Burgess
Date
:
06 Mar 02 (Deposition) - 17 Apr 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Apo-Protein, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
B. Schmid, M. W. Ribbe, O. Einsle, M. Yoshida, L. M. Thomas, D. R. Dean, D. C. Rees, B. K. Burgess
Structure Of A Cofactor-Deficient Nitrogenase Mofe Protein.
Science V. 296 352 2002
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: FE(8)-S(7) CLUSTER (CLFa)
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No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CLF
2
Ligand/Ion
FE(8)-S(7) CLUSTER
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:549 , ARG B:108 , GLU B:109 , ASP B:353 , ASP B:357 , HOH B:708
BINDING SITE FOR RESIDUE CA B 601
2
AC2
SOFTWARE
CYS A:62 , TYR A:64 , CYS A:88 , CYS A:154 , GLY A:185 , CYS B:70 , PRO B:72 , SER B:92 , GLY B:94 , CYS B:95 , TYR B:98 , THR B:152 , CYS B:153 , SER B:188
BINDING SITE FOR RESIDUE CLF B 602
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: NITROGENASE_1_1 (B:88-95)
2: NITROGENASE_1_2 (B:151-165)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NITROGENASE_1_1
PS00699
Nitrogenases component 1 alpha and beta subunits signature 1.
NIFD_AZOVI
81-88
2
A:81-88
NIFK_AZOVI
88-95
2
B:88-95
2
NITROGENASE_1_2
PS00090
Nitrogenases component 1 alpha and beta subunits signature 2.
NIFK_AZOVI
151-165
2
B:151-165
NIFD_AZOVI
152-166
2
A:152-166
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1l5ha_ (A:)
2a: SCOP_d1l5hb_ (B:)
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Protein Domains
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Chelatase-like
(149)
Superfamily
:
Helical backbone metal receptor
(102)
Family
:
Nitrogenase iron-molybdenum protein
(41)
Protein domain
:
Nitrogenase iron-molybdenum protein, alpha chain
(15)
Azotobacter vinelandii [TaxId: 354]
(10)
1a
d1l5ha_
A:
Protein domain
:
Nitrogenase iron-molybdenum protein, beta chain
(20)
Azotobacter vinelandii [TaxId: 354]
(15)
2a
d1l5hb_
B:
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CATH Domains
(2, 7)
Info
all CATH domains
1a: CATH_1l5hA01 (A:50-208)
1b: CATH_1l5hB01 (B:70-215)
1c: CATH_1l5hA03 (A:209-319)
1d: CATH_1l5hB03 (B:365-470)
1e: CATH_1l5hB02 (B:216-320)
1f: CATH_1l5hA02 (A:345-480)
2a: CATH_1l5hB04 (B:321-364,B:485-523)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Nitrogenase molybdenum iron protein domain
(45)
Azotobacter vinelandii. Organism_taxid: 354.
(3)
1a
1l5hA01
A:50-208
1b
1l5hB01
B:70-215
1c
1l5hA03
A:209-319
1d
1l5hB03
B:365-470
1e
1l5hB02
B:216-320
1f
1l5hA02
A:345-480
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Nitrogenase Molybdenum-iron Protein, subunit B; domain 4
(19)
Homologous Superfamily
:
Nitrogenase Molybdenum-iron Protein, subunit B, domain 4
(19)
Azotobacter vinelandii. Organism_taxid: 354.
(3)
2a
1l5hB04
B:321-364,B:485-523
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Pfam Domains
(2, 3)
Info
all PFAM domains
1a: PFAM_DUF3364_1l5hB01 (B:2-56)
2a: PFAM_Oxidored_nitro_1l5hA01 (A:62-468)
2b: PFAM_Oxidored_nitro_1l5hB02 (B:70-502)
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Clan
:
no clan defined [family: DUF3364]
(10)
Family
:
DUF3364
(10)
Azotobacter vinelandii
(8)
1a
DUF3364-1l5hB01
B:2-56
Clan
:
no clan defined [family: Oxidored_nitro]
(12)
Family
:
Oxidored_nitro
(12)
Azotobacter vinelandii
(8)
2a
Oxidored_nitro-1l5hA01
A:62-468
2b
Oxidored_nitro-1l5hB02
B:70-502
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Asym.Unit (161 KB)
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