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1L5F
Biol. Unit 1
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Asym.Unit (56 KB)
Biol.Unit 1 (103 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF COBT COMPLEXED WITH BENZIMIDAZOLE
Authors
:
C. -G. Cheong, J. Escalante-Semerena, I. Rayment
Date
:
06 Mar 02 (Deposition) - 07 Sep 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Cobt, Cobalamin Synthetic Enzyme, Phosphoribosyltransferase, 5, 6- Dimethylbenzimidazole, Nicotinate Mononucleotide, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. G. Cheong, J. C. Escalante-Semerena, I. Rayment
Structural Studies Of The L-Threonine-O-3-Phosphate Decarboxylase (Cobd) Enzyme From Salmonella Enterica: The Apo, Substrate, And Product-Aldimine Complexes.
Biochemistry V. 41 9079 2002
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: BENZIMIDAZOLE (BZIa)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
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No.
Name
Count
Type
Full Name
1
BZI
2
Ligand/Ion
BENZIMIDAZOLE
2
PO4
4
Ligand/Ion
PHOSPHATE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:78 , ALA A:178 , ASN A:179 , THR A:180 , GLY A:202 , ALA A:203 , HOH A:403 , HOH A:407 , HOH A:422 , HOH A:463
BINDING SITE FOR RESIDUE PO4 A 992
2
AC2
SOFTWARE
GLY A:264 , PHE A:265 , LEU A:266 , SER A:291 , ARG A:314 , LEU A:315 , GLY A:316 , HOH A:402 , HOH A:432
BINDING SITE FOR RESIDUE PO4 A 991
3
AC3
SOFTWARE
PRO A:32 , VAL A:84 , GLN A:88 , GLU A:317
BINDING SITE FOR RESIDUE BZI A 990
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1l5fa_ (A:)
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Protein Domains
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
(41)
Superfamily
:
Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
(41)
Family
:
Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
(36)
Protein domain
:
Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
(29)
Salmonella typhimurium [TaxId: 90371]
(28)
1a
d1l5fa_
A:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1l5fA02 (A:58-329)
2a: CATH_1l5fA01 (A:4-57,A:330-349)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.10210, no name defined]
(30)
Salmonella enterica. Organism_taxid: 28901.
(15)
1a
1l5fA02
A:58-329
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
5,6-Dimethylbenzimidazole Phosphoribosyltransferase; Chain: A; domain 1
(30)
Homologous Superfamily
:
[code=1.10.1610.10, no name defined]
(30)
Salmonella enterica. Organism_taxid: 28901.
(15)
2a
1l5fA01
A:4-57,A:330-349
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_DBI_PRT_1l5fA01 (A:7-346)
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Clan
:
no clan defined [family: DBI_PRT]
(24)
Family
:
DBI_PRT
(24)
Salmonella typhimurium
(22)
1a
DBI_PRT-1l5fA01
A:7-346
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Asym.Unit (56 KB)
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