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1L3Y
Asym. Unit
Info
Asym.Unit (144 KB)
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Models
(15 )
Title
:
INTEGRIN EGF-LIKE MODULE 3 FROM THE BETA-2 SUBUNIT
Authors
:
N. Beglova, S. C. Blacklow, J. Takagi, T. A. Springer
Date
:
03 Mar 02 (Deposition) - 01 Apr 02 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (15 x)
Keywords
:
Integrin, Beta-2 Subunit, Cell Adhesion, Cysteine-Rich Module, Egf-Like Module
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
N. Beglova, S. C. Blacklow, J. Takagi, T. A. Springer
Cysteine-Rich Module Structure Reveals A Fulcrum For Integrin Rearrangement Upon Activation.
Nat. Struct. Biol. V. 9 282 2002
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: EGF_1 (-|A:28-39)
2: EGF_2 (-|A:28-40|-)
3: INTEGRIN_BETA (-|A:15-30|-)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_1
PS00022
EGF-like domain signature 1.
ITB2_HUMAN
470-481
562-573
1
-
A:28-39
2
EGF_2
PS01186
EGF-like domain signature 2.
ITB2_HUMAN
470-483
562-575
601-615
1
-
A:28-40
-
3
INTEGRIN_BETA
PS00243
Integrins beta chain cysteine-rich domain signature.
ITB2_HUMAN
506-519
549-564
590-603
1
-
A:15-30
-
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Exons
(2, 2)
Info
All Exons
Exon 1.17 (A:1-19)
Exon 1.18 (A:19-41)
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All Exon Boundaries
1: Boundary 1.16/1.17
2: Boundary 1.17/1.18
3: Boundary 1.18/1.19b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.5
ENST00000397857
5
ENSE00001530495
chr21:
46331375-46331291
85
ITB2_HUMAN
-
0
0
-
-
1.7b
ENST00000397857
7b
ENSE00002161928
chr21:
46330700-46330640
61
ITB2_HUMAN
1-20
20
0
-
-
1.7i
ENST00000397857
7i
ENSE00002166383
chr21:
46330287-46330199
89
ITB2_HUMAN
20-49
30
0
-
-
1.10c
ENST00000397857
10c
ENSE00001050919
chr21:
46327010-46326830
181
ITB2_HUMAN
50-110
61
0
-
-
1.11e
ENST00000397857
11e
ENSE00002202060
chr21:
46323450-46323280
171
ITB2_HUMAN
110-167
58
0
-
-
1.12b
ENST00000397857
12b
ENSE00001050930
chr21:
46321648-46321407
242
ITB2_HUMAN
167-247
81
0
-
-
1.13
ENST00000397857
13
ENSE00001314546
chr21:
46320390-46320235
156
ITB2_HUMAN
248-299
52
0
-
-
1.14
ENST00000397857
14
ENSE00002181070
chr21:
46319077-46318982
96
ITB2_HUMAN
300-331
32
0
-
-
1.15a
ENST00000397857
15a
ENSE00001280312
chr21:
46314975-46314886
90
ITB2_HUMAN
332-361
30
0
-
-
1.15d
ENST00000397857
15d
ENSE00001280354
chr21:
46313459-46313319
141
ITB2_HUMAN
362-408
47
0
-
-
1.16
ENST00000397857
16
ENSE00001280307
chr21:
46311911-46311724
188
ITB2_HUMAN
409-471
63
0
-
-
1.17
ENST00000397857
17
ENSE00001280195
chr21:
46310137-46309893
245
ITB2_HUMAN
471-553
83
1
A:1-19
19
1.18
ENST00000397857
18
ENSE00001280299
chr21:
46309410-46309191
220
ITB2_HUMAN
553-626
74
1
A:19-41
23
1.19b
ENST00000397857
19b
ENSE00001050945
chr21:
46308810-46308608
203
ITB2_HUMAN
626-694
69
0
-
-
1.20
ENST00000397857
20
ENSE00001280183
chr21:
46306817-46306651
167
ITB2_HUMAN
694-749
56
0
-
-
1.21c
ENST00000397857
21c
ENSE00001280374
chr21:
46306345-46305868
478
ITB2_HUMAN
750-769
20
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1l3ya_ (A:)
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Class
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Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
Integrin beta EGF-like domains
(5)
Protein domain
:
Integrin beta EGF-like domains
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1l3ya_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1l3yA00 (A:1-41)
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Class
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Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Laminin
(270)
Homologous Superfamily
:
Laminin
(263)
Human (Homo sapiens)
(195)
1a
1l3yA00
A:1-41
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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