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1L3W
Asym. Unit
Info
Asym.Unit (94 KB)
Biol.Unit 1 (82 KB)
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(1)
Title
:
C-CADHERIN ECTODOMAIN
Authors
:
T. J. Boggon, J. Murray, S. Chappuis-Flament, E. Wong, B. M. Gumbiner, L
Date
:
01 Mar 02 (Deposition) - 26 Apr 02 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.08
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Cell Adhesion, Calcium Binding, Cadherin, Extracellular, Ectodomain, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. J. Boggon, J. Murray, S. Chappuis-Flament, E. Wong, B. M. Gumbiner, L. Shapiro
C-Cadherin Ectodomain Structure And Implications For Cell Adhesion Mechanisms
Science V. 296 1308 2002
[
close entry info
]
Hetero Components
(3, 27)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
3b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
3c: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGc)
3d: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
12
Ligand/Ion
CALCIUM ION
2
NAG
11
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
NDG
4
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:154 , PRO A:155 , GLU A:186 , TYR A:187 , THR A:188
BINDING SITE FOR RESIDUE NAG A 801
02
AC2
SOFTWARE
ASP A:222 , THR A:245
BINDING SITE FOR RESIDUE NAG A 802
03
AC3
SOFTWARE
VAL A:258 , TYR A:259 , ILE A:271 , THR A:272 , THR A:273
BINDING SITE FOR RESIDUE NAG A 803
04
AC4
SOFTWARE
PHE A:308 , LEU A:312 , THR A:314
BINDING SITE FOR RESIDUE NDG A 804
05
AC5
SOFTWARE
THR A:301 , THR A:314 , THR A:316 , NAG A:806
BINDING SITE FOR RESIDUE NAG A 805
06
AC6
SOFTWARE
THR A:225 , GLN A:299 , THR A:316 , THR A:318 , NAG A:805
BINDING SITE FOR RESIDUE NAG A 806
07
AC7
SOFTWARE
THR A:227 , VAL A:297 , THR A:320
BINDING SITE FOR RESIDUE NAG A 807
08
AC8
SOFTWARE
TYR A:406 , THR A:407
BINDING SITE FOR RESIDUE NAG A 808
09
AC9
SOFTWARE
LEU A:411 , VAL A:419 , GLY A:420 , THR A:421 , NAG A:810
BINDING SITE FOR RESIDUE NAG A 809
10
BC1
SOFTWARE
THR A:421 , THR A:423 , NAG A:809 , NDG A:811
BINDING SITE FOR RESIDUE NAG A 810
11
BC2
SOFTWARE
ALA A:335 , ILE A:409 , THR A:425 , NAG A:810
BINDING SITE FOR RESIDUE NDG A 811
12
BC3
SOFTWARE
TYR A:226 , THR A:227 , ALA A:228 , GLN A:240
BINDING SITE FOR RESIDUE NAG A 812
13
BC4
SOFTWARE
ASN A:403
BINDING SITE FOR RESIDUE NDG A 902
14
BC5
SOFTWARE
ASN A:270
BINDING SITE FOR RESIDUE NDG A 903
15
BC6
SOFTWARE
VAL A:524 , ASN A:526
BINDING SITE FOR RESIDUE NAG A 904
16
BC7
SOFTWARE
ASN A:102 , ASN A:104 , ASP A:134 , ASP A:136 , ASN A:143 , ASP A:195
BINDING SITE FOR RESIDUE CA A 600
17
BC8
SOFTWARE
GLU A:11 , GLU A:69 , ASP A:100 , GLN A:101 , ASP A:103 , ASP A:136
BINDING SITE FOR RESIDUE CA A 601
18
BC9
SOFTWARE
GLU A:11 , ASN A:12 , ASP A:67 , GLU A:69 , ASP A:103
BINDING SITE FOR RESIDUE CA A 602
19
CC1
SOFTWARE
GLU A:119 , GLU A:182 , ASP A:213 , ALA A:214 , ASP A:216 , ASP A:248
BINDING SITE FOR RESIDUE CA A 603
20
CC2
SOFTWARE
GLU A:119 , ASP A:180 , GLU A:182 , ASP A:216
BINDING SITE FOR RESIDUE CA A 604
21
CC3
SOFTWARE
ASN A:215 , ASN A:217 , ASP A:246 , ASP A:248 , ALA A:254 , ASN A:304
BINDING SITE FOR RESIDUE CA A 605
22
CC4
SOFTWARE
GLU A:232 , ASP A:289 , GLU A:291 , GLU A:328 , CA A:610
BINDING SITE FOR RESIDUE CA A 606
23
CC5
SOFTWARE
ASN A:327 , GLU A:328 , ASP A:358 , ASP A:360 , GLN A:365 , ASP A:414
BINDING SITE FOR RESIDUE CA A 607
24
CC6
SOFTWARE
GLU A:343 , ASP A:395 , GLU A:397 , ASP A:435 , CA A:611
BINDING SITE FOR RESIDUE CA A 608
25
CC7
SOFTWARE
ASN A:434 , ASN A:436 , ASP A:461 , ASP A:463 , ASN A:467 , ASP A:515
BINDING SITE FOR RESIDUE CA A 609
26
CC8
SOFTWARE
GLU A:232 , GLU A:291 , ASP A:325 , VAL A:326 , GLU A:328 , ASP A:360 , CA A:606
BINDING SITE FOR RESIDUE CA A 610
27
CC9
SOFTWARE
GLU A:343 , GLU A:397 , ASP A:432 , VAL A:433 , ASP A:435 , ASP A:463 , CA A:608
BINDING SITE FOR RESIDUE CA A 611
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 7)
Info
All PROSITE Patterns/Profiles
1: CADHERIN_2 (A:1-108|A:109-221|A:222-332|A:333-...)
2: CADHERIN_1 (A:96-106|A:209-219|A:428-438)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CADHERIN_2
PS50268
Cadherins domain profile.
CADHF_XENLA
156-263
264-376
377-487
488-599
4
A:1-108
A:109-221
A:222-332
A:333-444
2
CADHERIN_1
PS00232
Cadherin domain signature.
CADHF_XENLA
251-261
364-374
583-593
3
A:96-106
A:209-219
A:428-438
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d1l3wa1 (A:1-100)
1b: SCOP_d1l3wa2 (A:101-213)
1c: SCOP_d1l3wa3 (A:214-326)
1d: SCOP_d1l3wa4 (A:327-433)
1e: SCOP_d1l3wa5 (A:434-540)
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Classes
(
)
(
)
Folds
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)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Cadherin-like
(44)
Family
:
Cadherin
(30)
Protein domain
:
C-cadherin ectodomain
(1)
African clawed frog (Xenopus laevis) [TaxId: 8355]
(1)
1a
d1l3wa1
A:1-100
1b
d1l3wa2
A:101-213
1c
d1l3wa3
A:214-326
1d
d1l3wa4
A:327-433
1e
d1l3wa5
A:434-540
[
close SCOP info
]
CATH Domains
(1, 5)
Info
all CATH domains
1a: CATH_1l3wA01 (A:1-101)
1b: CATH_1l3wA02 (A:102-213)
1c: CATH_1l3wA04 (A:328-433)
1d: CATH_1l3wA05 (A:434-540)
1e: CATH_1l3wA03 (A:214-327)
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)
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Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cadherins
(28)
African clawed frog (Xenopus laevis)
(1)
1a
1l3wA01
A:1-101
1b
1l3wA02
A:102-213
1c
1l3wA04
A:328-433
1d
1l3wA05
A:434-540
1e
1l3wA03
A:214-327
[
close CATH info
]
Pfam Domains
(1, 5)
Info
all PFAM domains
1a: PFAM_Cadherin_1l3wA01 (A:443-530)
1b: PFAM_Cadherin_1l3wA02 (A:443-530)
1c: PFAM_Cadherin_1l3wA03 (A:443-530)
1d: PFAM_Cadherin_1l3wA04 (A:443-530)
1e: PFAM_Cadherin_1l3wA05 (A:443-530)
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Clans
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)
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)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
E-set
(290)
Family
:
Cadherin
(41)
Xenopus laevis (African clawed frog)
(2)
1a
Cadherin-1l3wA01
A:443-530
1b
Cadherin-1l3wA02
A:443-530
1c
Cadherin-1l3wA03
A:443-530
1d
Cadherin-1l3wA04
A:443-530
1e
Cadherin-1l3wA05
A:443-530
[
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]
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Asymmetric Unit 1
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Asym.Unit (94 KB)
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