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1L3I
Biol. Unit 1
Info
Asym.Unit (198 KB)
Biol.Unit 1 (129 KB)
Biol.Unit 2 (126 KB)
Biol.Unit 3 (373 KB)
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(1)
Title
:
MT0146, THE PRECORRIN-6Y METHYLTRANSFERASE (CBIT) HOMOLOG FROM M. THERMOAUTOTROPHICUM, ADOHCY BINARY COMPLEX
Authors
:
J. P. Keller, P. M. Smith, J. Benach, D. Christendat, G. Detitta, J. F. Hunt
Date
:
27 Feb 02 (Deposition) - 27 Nov 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F (2x)
Biol. Unit 3: A,B,C,D,E,F (2x)
Keywords
:
Structural Genomics, Beta Barrel, Rossmann Fold, Tetramer, Methyltransferase, Decarboxylase, Structure-Based Function Assignment, Transferase, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. P. Keller, P. M. Smith, J. Benach, D. Christendat, G. Detitta, J. F. Hunt
The Crystal Structure Of Mt0146/Cbit Suggests That The Putative Precorrin-8W Decarboxylase Is A Methyltransferase
Structure V. 10 1475 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 36)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1aa: SELENOMETHIONINE (MSEaa)
1ab: SELENOMETHIONINE (MSEab)
1ac: SELENOMETHIONINE (MSEac)
1ad: SELENOMETHIONINE (MSEad)
1ae: SELENOMETHIONINE (MSEae)
1af: SELENOMETHIONINE (MSEaf)
1ag: SELENOMETHIONINE (MSEag)
1ah: SELENOMETHIONINE (MSEah)
1ai: SELENOMETHIONINE (MSEai)
1aj: SELENOMETHIONINE (MSEaj)
1ak: SELENOMETHIONINE (MSEak)
1al: SELENOMETHIONINE (MSEal)
1am: SELENOMETHIONINE (MSEam)
1an: SELENOMETHIONINE (MSEan)
1ao: SELENOMETHIONINE (MSEao)
1ap: SELENOMETHIONINE (MSEap)
1aq: SELENOMETHIONINE (MSEaq)
1ar: SELENOMETHIONINE (MSEar)
1as: SELENOMETHIONINE (MSEas)
1at: SELENOMETHIONINE (MSEat)
1au: SELENOMETHIONINE (MSEau)
1av: SELENOMETHIONINE (MSEav)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
1y: SELENOMETHIONINE (MSEy)
1z: SELENOMETHIONINE (MSEz)
2a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
2b: S-ADENOSYL-L-HOMOCYSTEINE (SAHb)
2c: S-ADENOSYL-L-HOMOCYSTEINE (SAHc)
2d: S-ADENOSYL-L-HOMOCYSTEINE (SAHd)
2e: S-ADENOSYL-L-HOMOCYSTEINE (SAHe)
2f: S-ADENOSYL-L-HOMOCYSTEINE (SAHf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
32
Mod. Amino Acid
SELENOMETHIONINE
2
SAH
4
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:14 , PRO A:16 , THR A:17 , GLY A:41 , CYS A:42 , GLY A:43 , THR A:44 , GLY A:45 , GLY A:46 , VAL A:47 , ASP A:62 , ARG A:63 , ALA A:67 , GLY A:89 , ASP A:90 , ALA A:91 , GLY A:107 , GLY A:108 , SER A:109 , GLY A:110 , GLU A:112 , HOH A:824 , HOH A:845 , HOH A:865 , HOH A:870
BINDING SITE FOR RESIDUE SAH A 801
2
AC2
SOFTWARE
PRO B:14 , GLY B:15 , PRO B:16 , THR B:17 , GLY B:41 , CYS B:42 , GLY B:43 , THR B:44 , GLY B:45 , GLY B:46 , VAL B:47 , ASP B:62 , ARG B:63 , ALA B:67 , GLY B:89 , ASP B:90 , ALA B:91 , GLY B:107 , GLY B:108 , SER B:109 , GLY B:110 , GLU B:112 , HOH B:825 , HOH B:847 , HOH B:871 , HOH B:910
BINDING SITE FOR RESIDUE SAH B 802
3
AC3
SOFTWARE
PRO C:14 , PRO C:16 , THR C:17 , GLY C:41 , CYS C:42 , GLY C:43 , THR C:44 , GLY C:45 , GLY C:46 , VAL C:47 , ASP C:62 , ARG C:63 , GLY C:89 , ASP C:90 , ALA C:91 , GLY C:107 , GLY C:108 , SER C:109 , GLY C:110 , GLU C:112 , HOH C:852 , HOH C:873 , HOH C:897 , HOH C:935
BINDING SITE FOR RESIDUE SAH C 803
4
AC4
SOFTWARE
PRO D:14 , GLY D:15 , PRO D:16 , THR D:17 , GLY D:41 , CYS D:42 , GLY D:43 , THR D:44 , GLY D:45 , GLY D:46 , VAL D:47 , ASP D:62 , ARG D:63 , GLY D:89 , ASP D:90 , ALA D:91 , GLY D:107 , GLY D:108 , SER D:109 , GLY D:110 , GLU D:112 , HOH D:823 , HOH D:862 , HOH D:880
BINDING SITE FOR RESIDUE SAH D 804
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1l3ia_ (A:)
1b: SCOP_d1l3ib_ (B:)
1c: SCOP_d1l3ic_ (C:)
1d: SCOP_d1l3id_ (D:)
1e: SCOP_d1l3ie_ (E:)
1f: SCOP_d1l3if_ (F:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Superfamily
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Family
:
Precorrin-6Y methyltransferase (CbiT)
(5)
Protein domain
:
Precorrin-6Y methyltransferase (CbiT)
(5)
Methanobacterium thermoautotrophicum [TaxId: 145262]
(5)
1a
d1l3ia_
A:
1b
d1l3ib_
B:
1c
d1l3ic_
C:
1d
d1l3id_
D:
1e
d1l3ie_
E:
1f
d1l3if_
F:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1l3iA00 (A:2-186)
1b: CATH_1l3iB00 (B:2-186)
1c: CATH_1l3iC00 (C:2-186)
1d: CATH_1l3iD00 (D:2-186)
1e: CATH_1l3iE00 (E:2-186)
1f: CATH_1l3iF00 (F:2-186)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Vaccinia Virus protein VP39
(378)
Methanothermobacter thermautotrophicus. Organism_taxid: 145262.
(5)
1a
1l3iA00
A:2-186
1b
1l3iB00
B:2-186
1c
1l3iC00
C:2-186
1d
1l3iD00
D:2-186
1e
1l3iE00
E:2-186
1f
1l3iF00
F:2-186
[
close CATH info
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Methyltransf_18_1l3iF01 (F:33-135)
1b: PFAM_Methyltransf_18_1l3iF02 (F:33-135)
1c: PFAM_Methyltransf_18_1l3iF03 (F:33-135)
1d: PFAM_Methyltransf_18_1l3iF04 (F:33-135)
1e: PFAM_Methyltransf_18_1l3iF05 (F:33-135)
1f: PFAM_Methyltransf_18_1l3iF06 (F:33-135)
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Clan
:
NADP_Rossmann
(1239)
Family
:
Methyltransf_18
(13)
Methanobacterium thermoautotrophicum (strain Delta H)
(3)
1a
Methyltransf_18-1l3iF01
F:33-135
1b
Methyltransf_18-1l3iF02
F:33-135
1c
Methyltransf_18-1l3iF03
F:33-135
1d
Methyltransf_18-1l3iF04
F:33-135
1e
Methyltransf_18-1l3iF05
F:33-135
1f
Methyltransf_18-1l3iF06
F:33-135
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