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1L2T
Biol. Unit 1
Info
Asym.Unit (89 KB)
Biol.Unit 1 (85 KB)
Biol.Unit 2 (167 KB)
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(1)
Title
:
DIMERIC STRUCTURE OF MJ0796, A BACTERIAL ABC TRANSPORTER CASSETTE
Authors
:
P. C. Smith, N. Karpowich, J. Rosen, J. F. Hunt
Date
:
24 Feb 02 (Deposition) - 24 Jul 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Abc Transporters, Atpase, Walker-A, Nbd, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. C. Smith, N. Karpowich, L. Millen, J. E. Moody, J. Rosen, P. J. Thomas, J. F. Hunt
Atp Binding To The Motor Domain From An Abc Transporter Drives Formation Of A Nucleotide Sandwich Dimer.
Mol. Cell V. 10 139 2002
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
2a: ISOPROPYL ALCOHOL (IPAa)
2b: ISOPROPYL ALCOHOL (IPAb)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ATP
2
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
IPA
2
Ligand/Ion
ISOPROPYL ALCOHOL
3
NA
-1
Ligand/Ion
SODIUM ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:2003 , SER B:1045 , GLN B:1090 , ATP B:1302 , HOH B:2337
BINDING SITE FOR RESIDUE NA B 1501
2
AC2
SOFTWARE
SER A:45 , GLN A:90 , ATP A:1301 , HOH A:2103 , HOH B:2012
BINDING SITE FOR RESIDUE NA A 1502
3
AC3
SOFTWARE
TYR A:11 , ALA A:20 , SER A:40 , GLY A:41 , SER A:42 , GLY A:43 , LYS A:44 , SER A:45 , THR A:46 , HIS A:204 , NA A:1502 , HOH A:2010 , HOH A:2047 , HOH A:2171 , HOH A:2356 , HOH A:2362 , HOH A:2400 , PHE B:1138 , HIS B:1141 , GLN B:1145 , SER B:1147 , GLY B:1148 , GLY B:1149 , GLN B:1150 , HOH B:2012
BINDING SITE FOR RESIDUE ATP A 1301
4
AC4
SOFTWARE
PHE A:138 , GLN A:145 , SER A:147 , GLY A:148 , GLY A:149 , GLN A:150 , HOH A:2003 , HOH A:2270 , TYR B:1011 , ALA B:1020 , SER B:1040 , GLY B:1041 , SER B:1042 , GLY B:1043 , LYS B:1044 , SER B:1045 , THR B:1046 , HIS B:1204 , NA B:1501 , HOH B:2030 , HOH B:2330 , HOH B:2345 , HOH B:2352
BINDING SITE FOR RESIDUE ATP B 1302
5
AC5
SOFTWARE
SER A:178 , GLU A:182 , HOH A:2297
BINDING SITE FOR RESIDUE IPA A 1600
6
AC6
SOFTWARE
GLY B:1181 , GLU B:1182 , HOH B:2321 , HOH B:2324
BINDING SITE FOR RESIDUE IPA B 1601
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ABC_TRANSPORTER_1 (A:146-160,B:1146-1160)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ABC_TRANSPORTER_1
PS00211
ABC transporters family signature.
Y796_METJA
146-160
2
A:146-160
B:1146-1160
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1l2ta_ (A:)
1b: SCOP_d1l2tb_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
ABC transporter ATPase domain-like
(94)
Protein domain
:
MJ0796
(2)
Methanococcus jannaschii [TaxId: 2190]
(2)
1a
d1l2ta_
A:
1b
d1l2tb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1l2tA00 (A:1-230)
1b: CATH_1l2tB00 (B:1001-1232)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Methanocaldococcus jannaschii. Organism_taxid: 2190.
(4)
1a
1l2tA00
A:1-230
1b
1l2tB00
B:1001-1232
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_ABC_tran_1l2tB01 (B:1045-1174)
1b: PFAM_ABC_tran_1l2tB02 (B:1045-1174)
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Clan
:
P-loop_NTPase
(1112)
Family
:
ABC_tran
(53)
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Meth
(1)
1a
ABC_tran-1l2tB01
B:1045-1174
1b
ABC_tran-1l2tB02
B:1045-1174
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Asymmetric Unit 1
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Asym.Unit (89 KB)
Header - Asym.Unit
Biol.Unit 1 (85 KB)
Header - Biol.Unit 1
Biol.Unit 2 (167 KB)
Header - Biol.Unit 2
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