PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1L0L
Asym. Unit
Info
Asym.Unit (352 KB)
Biol.Unit 1 (338 KB)
Biol.Unit 2 (670 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF BOVINE MITOCHONDRIAL CYTOCHROME BC1 COMPLEX WITH A BOUND FUNGICIDE FAMOXADONE
Authors
:
X. Gao, X. Wen, C. A. Yu, L. Esser, S. Tsao, B. Quinn, L. Zhang, L. Yu, D. Xia
Date
:
11 Feb 02 (Deposition) - 08 Apr 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K (1x)
Biol. Unit 2: A,B,C,D,E,F,G,H,I,J,K (2x)
Keywords
:
Cytochrome Bc1, Membrane Protein, Heme Protein, Iron Sulfur Protein, Cytochrome B, Cytochrome C1, Mitochondrial Processing Protease, Mpp, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Gao, X. Wen, C. A. Yu, L. Esser, S. Tsao, B. Quinn, L. Zhang, L. Yu, D. Xi
The Crystal Structure Of Mitochondrial Cytochrome Bc1 In Complex With Famoxadone: The Role Of Aromatic-Aromatic Interaction In Inhibition
Biochemistry V. 41 11692 2003
[
close entry info
]
Hetero Components
(3, 5)
Info
All Hetero Components
1a: FE2/S2 (INORGANIC) CLUSTER (FESa)
2a: FAMOXADONE (FMXa)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FES
1
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
2
FMX
1
Ligand/Ion
FAMOXADONE
3
HEM
3
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
[
close Hetero Component info
]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP C:31 , GLY C:34 , LEU C:37 , HIS C:97 , VAL C:98 , ARG C:100 , SER C:106 , TRP C:113 , GLY C:116 , VAL C:117 , LEU C:119 , HIS C:196 , LEU C:200 , ASN C:206
BINDING SITE FOR RESIDUE HEM C 609
2
AC2
SOFTWARE
GLN C:44 , ILE C:45 , GLY C:48 , ARG C:80 , HIS C:83 , ALA C:87 , PHE C:90 , THR C:126 , GLY C:130 , TYR C:131 , LEU C:133 , PRO C:134 , PHE C:179 , HIS C:182 , PHE C:183 , PRO C:186
BINDING SITE FOR RESIDUE HEM C 610
3
AC3
SOFTWARE
MET C:124 , PHE C:128 , TYR C:131 , MET C:138 , GLY C:142 , ILE C:146 , ILE C:268 , PRO C:270 , GLU C:271 , TYR C:273 , PHE C:274 , TYR C:278 , ILE C:298
BINDING SITE FOR RESIDUE FMX C 611
4
AC4
SOFTWARE
CYS D:37 , CYS D:40 , HIS D:41 , ASN D:105 , ALA D:108 , LEU D:109 , PRO D:111 , ARG D:120 , TYR D:126 , LEU D:131 , PHE D:153 , ILE D:158 , GLY D:159 , MET D:160
BINDING SITE FOR RESIDUE HEM D 242
5
AC5
SOFTWARE
CYS E:139 , HIS E:141 , LEU E:142 , GLY E:143 , CYS E:144 , CYS E:158 , PRO E:159 , HIS E:161 , GLY E:162 , SER E:163
BINDING SITE FOR RESIDUE FES E 197
[
close Site info
]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_QCR2_BOVIN_001 (T27R, chain B, )
2: VAR_CYB_BOVIN_001 (F90V, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_QCR2_BOVIN_001
*
T
41
R
QCR2_BOVIN
---
---
B
T
27
R
2
UniProt
VAR_CYB_BOVIN_001
*
F
90
V
CYB_BOVIN
---
---
C
F
90
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: INSULINASE (B:54-77)
2: CYTC (D:24-125)
3: RIESKE (E:109-194)
4: CYTB_CTER (C:210-379)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
INSULINASE
PS00143
Insulinase family, zinc-binding region signature.
QCR2_BOVIN
68-91
1
B:54-77
2
CYTC
PS51007
Cytochrome c family profile.
CY1_BOVIN
108-209
1
D:24-125
3
RIESKE
PS51296
Rieske [2Fe-2S] iron-sulfur domain profile.
UCRI_BOVIN
187-272
1
E:109-194
4
CYTB_CTER
PS51003
Cytochrome b/b6 C-terminal region profile.
CYB_BOVIN
210-379
1
C:210-379
[
close PROSITE info
]
Exons
(33, 33)
Info
All Exons
Exon 1.1 (J:2-49)
Exon 1.2 (J:50-61)
Exon 2.1 (F:2-6)
Exon 2.2 (F:6-30)
Exon 2.3 (F:30-85)
Exon 2.4 (F:86-110)
Exon 3.1 (K:1-17)
Exon 3.2 (K:17-53)
Exon 4.1 (H:1-5)
Exon 4.2 (H:6-14)
Exon 4.3 (H:15-68)
Exon 4.4 (H:69-78)
Exon 5.2 (D:1-26)
Exon 5.3 (D:26-68)
Exon 5.4 (D:69-121)
Exon 5.5 (D:121-175)
Exon 5.6 (D:175-208)
Exon 5.7 (D:209-240)
Exon 6.2 (B:17-25)
Exon 6.3 (B:26-75)
Exon 6.4 (B:76-97)
Exon 6.5 (B:97-116)
Exon 6.6 (B:116-158)
Exon 6.7 (B:158-190)
Exon 6.8 (B:191-210)
Exon 6.9 (B:210-244)
Exon 6.10 (B:244-310)
Exon 6.11 (B:311-337)
Exon 6.12 (B:338-363)
Exon 6.13 (B:363-414)
Exon 6.14 (B:415-439)
Exon 7.2b (G:1-51)
Exon 7.3a (G:51-79)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/-
04: Boundary -/2.1
05: Boundary 2.1/2.2
06: Boundary 2.2/2.3
07: Boundary 2.3/2.4
08: Boundary 2.4/-
09: Boundary -/3.1
10: Boundary 3.1/3.2
11: Boundary 3.2/3.3
12: Boundary -/4.1
13: Boundary 4.1/4.2
14: Boundary 4.2/4.3
15: Boundary 4.3/4.4
16: Boundary 4.4/-
17: Boundary 5.1b/5.2
18: Boundary 5.2/5.3
19: Boundary 5.3/5.4
20: Boundary 5.4/5.5
21: Boundary 5.5/5.6
22: Boundary 5.6/5.7
23: Boundary 5.7/-
24: Boundary 6.1/6.2
25: Boundary 6.2/6.3
26: Boundary 6.3/6.4
27: Boundary 6.4/6.5
28: Boundary 6.5/6.6
29: Boundary 6.6/6.7
30: Boundary 6.7/6.8
31: Boundary 6.8/6.9
32: Boundary 6.9/6.10
33: Boundary 6.10/6.11
34: Boundary 6.11/6.12
35: Boundary 6.12/6.13
36: Boundary 6.13/6.14
37: Boundary 6.14/-
38: Boundary 7.1/7.2b
39: Boundary 7.2b/7.3a
40: Boundary 7.3a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000001208
1
ENSBTAE00000009533
chr17:
72385739-72385937
199
QCR9_BOVIN
1-50
50
1
J:2-49
48
1.2
ENSBTAT00000001208
2
ENSBTAE00000240376
chr17:
72387672-72387934
263
QCR9_BOVIN
51-64
14
1
J:50-61
12
2.1
ENSBTAT00000001993
1
ENSBTAE00000281422
chr14:
66190479-66190506
28
QCR7_BOVIN
1-7
7
1
F:2-6
5
2.2
ENSBTAT00000001993
2
ENSBTAE00000015823
chr14:
66193251-66193322
72
QCR7_BOVIN
7-31
25
1
F:6-30
25
2.3
ENSBTAT00000001993
3
ENSBTAE00000015824
chr14:
66194160-66194326
167
QCR7_BOVIN
31-86
56
1
F:30-85
56
2.4
ENSBTAT00000001993
4
ENSBTAE00000015825
chr14:
66194981-66195189
209
QCR7_BOVIN
87-111
25
1
F:86-110
25
3.1
ENSBTAT00000011458
1
ENSBTAE00000092899
chr7:
42998533-42998442
92
QCR10_BOVIN
1-17
17
1
K:1-17
17
3.2
ENSBTAT00000011458
2
ENSBTAE00000092905
chr7:
42996204-42996061
144
QCR10_BOVIN
17-56
40
1
K:17-53
37
3.3
ENSBTAT00000011458
3
ENSBTAE00000092907
chr7:
42995734-42995581
154
QCR10_BOVIN
-
0
0
-
-
4.1
ENSBTAT00000012635
1
ENSBTAE00000102910
chr3:
106702634-106702168
467
QCR6_BOVIN
1-18
18
1
H:1-5
5
4.2
ENSBTAT00000012635
2
ENSBTAE00000102912
chr3:
106697217-106697191
27
QCR6_BOVIN
19-27
9
1
H:6-14
9
4.3
ENSBTAT00000012635
3
ENSBTAE00000102913
chr3:
106696456-106696295
162
QCR6_BOVIN
28-81
54
1
H:15-68
54
4.4
ENSBTAT00000012635
4
ENSBTAE00000102915
chr3:
106693481-106693272
210
QCR6_BOVIN
82-91
10
1
H:69-78
10
5.1b
ENSBTAT00000016224
1b
ENSBTAE00000292082
chr14:
574603-574430
174
CY1_BOVIN
1-44
44
0
-
-
5.2
ENSBTAT00000016224
2
ENSBTAE00000132070
chr14:
573852-573656
197
CY1_BOVIN
45-110
66
1
D:1-26
26
5.3
ENSBTAT00000016224
3
ENSBTAE00000132074
chr14:
573573-573447
127
CY1_BOVIN
110-152
43
1
D:26-68
43
5.4
ENSBTAT00000016224
4
ENSBTAE00000132078
chr14:
573361-573204
158
CY1_BOVIN
153-205
53
1
D:69-121
53
5.5
ENSBTAT00000016224
5
ENSBTAE00000132082
chr14:
573118-572958
161
CY1_BOVIN
205-259
55
1
D:121-175
55
5.6
ENSBTAT00000016224
6
ENSBTAE00000132086
chr14:
572706-572606
101
CY1_BOVIN
259-292
34
1
D:175-208
34
5.7
ENSBTAT00000016224
7
ENSBTAE00000132089
chr14:
572504-572208
297
CY1_BOVIN
293-326
34
1
D:209-240
32
6.1
ENSBTAT00000028853
1
ENSBTAE00000235576
chr25:
20764371-20764490
120
QCR2_BOVIN
1-11
11
0
-
-
6.2
ENSBTAT00000028853
2
ENSBTAE00000235577
chr25:
20767797-20767880
84
QCR2_BOVIN
12-39
28
1
B:17-25
9
6.3
ENSBTAT00000028853
3
ENSBTAE00000235578
chr25:
20767977-20768126
150
QCR2_BOVIN
40-89
50
1
B:26-75
50
6.4
ENSBTAT00000028853
4
ENSBTAE00000235579
chr25:
20769183-20769247
65
QCR2_BOVIN
90-111
22
1
B:76-97
22
6.5
ENSBTAT00000028853
5
ENSBTAE00000235580
chr25:
20770580-20770636
57
QCR2_BOVIN
111-130
20
1
B:97-116
20
6.6
ENSBTAT00000028853
6
ENSBTAE00000235581
chr25:
20770859-20770983
125
QCR2_BOVIN
130-172
43
1
B:116-158
43
6.7
ENSBTAT00000028853
7
ENSBTAE00000235582
chr25:
20772505-20772602
98
QCR2_BOVIN
172-204
33
1
B:158-190
33
6.8
ENSBTAT00000028853
8
ENSBTAE00000235583
chr25:
20774198-20774255
58
QCR2_BOVIN
205-224
20
1
B:191-210
20
6.9
ENSBTAT00000028853
9
ENSBTAE00000235584
chr25:
20777626-20777727
102
QCR2_BOVIN
224-258
35
1
B:210-244
35
6.10
ENSBTAT00000028853
10
ENSBTAE00000235585
chr25:
20778050-20778249
200
QCR2_BOVIN
258-324
67
1
B:244-310
67
6.11
ENSBTAT00000028853
11
ENSBTAE00000235586
chr25:
20782833-20782913
81
QCR2_BOVIN
325-351
27
1
B:311-337
27
6.12
ENSBTAT00000028853
12
ENSBTAE00000235587
chr25:
20784744-20784820
77
QCR2_BOVIN
352-377
26
1
B:338-363
26
6.13
ENSBTAT00000028853
13
ENSBTAE00000235588
chr25:
20787573-20787726
154
QCR2_BOVIN
377-428
52
1
B:363-414
52
6.14
ENSBTAT00000028853
14
ENSBTAE00000235591
chr25:
20791058-20791318
261
QCR2_BOVIN
429-455
27
1
B:415-439
25
7.1
ENSBTAT00000043278
1
ENSBTAE00000319718
chr7:
44095741-44095798
58
QCR8_BOVIN
-
0
0
-
-
7.2b
ENSBTAT00000043278
2b
ENSBTAE00000319717
chr7:
44095954-44096121
168
QCR8_BOVIN
1-52
52
1
G:1-51
51
7.3a
ENSBTAT00000043278
3a
ENSBTAE00000319712
chr7:
44096758-44096953
196
QCR8_BOVIN
52-82
31
1
G:51-79
29
[
close EXON info
]
SCOP Domains
(14, 16)
Info
All SCOP Domains
01a: SCOP_d1l0ld1 (D:1-195)
02a: SCOP_d1l0le1 (E:70-196)
03a: SCOP_d1l0la1 (A:1-233)
03b: SCOP_d1l0la2 (A:234-446)
04a: SCOP_d1l0lb1 (B:17-235)
04b: SCOP_d1l0lb2 (B:236-439)
05a: SCOP_d1l0li_ (I:)
06a: SCOP_d1l0lf_ (F:)
07a: SCOP_d1l0lc1 (C:261-379)
08a: SCOP_d1l0lc2 (C:3-260)
09a: SCOP_d1l0lh_ (H:)
10a: SCOP_d1l0ld2 (D:196-240)
11a: SCOP_d1l0le2 (E:1-69)
12a: SCOP_d1l0lj_ (J:)
13a: SCOP_d1l0lk_ (K:)
14a: SCOP_d1l0lg_ (G:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome c
(308)
Superfamily
:
Cytochrome c
(308)
Family
:
Cytochrome bc1 domain
(36)
Protein domain
:
Cytochrome bc1 domain
(27)
Cow (Bos taurus) [TaxId: 9913]
(17)
01a
d1l0ld1
D:1-195
Class
:
All beta proteins
(24004)
Fold
:
ISP domain
(115)
Superfamily
:
ISP domain
(115)
Family
:
Rieske iron-sulfur protein (ISP)
(50)
Protein domain
:
ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain
(28)
Cow (Bos taurus) [TaxId: 9913]
(18)
02a
d1l0le1
E:70-196
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
LuxS/MPP-like metallohydrolase
(89)
Superfamily
:
LuxS/MPP-like metallohydrolase
(89)
Family
:
MPP-like
(65)
Protein domain
:
Cytochrome bc1 core subunit 1
(27)
Cow (Bos taurus) [TaxId: 9913]
(17)
03a
d1l0la1
A:1-233
03b
d1l0la2
A:234-446
Protein domain
:
Cytochrome bc1 core subunit 2
(27)
Cow (Bos taurus) [TaxId: 9913]
(17)
04a
d1l0lb1
B:17-235
04b
d1l0lb2
B:236-439
Fold
:
Non-globular alpha+beta subunits of globular proteins
(21)
Superfamily
:
Non-globular alpha+beta subunits of globular proteins
(21)
Family
:
Ubiquinol-cytochrome c reductase 8 kDa protein
(17)
Protein domain
:
Ubiquinol-cytochrome c reductase 8 kDa protein
(14)
Cow (Bos taurus) [TaxId: 9913]
(14)
05a
d1l0li_
I:
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Superfamily
:
14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Family
:
14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Protein domain
:
14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(21)
Cow (Bos taurus) [TaxId: 9913]
(14)
06a
d1l0lf_
F:
Fold
:
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(46)
Superfamily
:
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(46)
Family
:
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(39)
Protein domain
:
Mitochondrial cytochrome b subunit, C-terminal domain
(30)
Cow (Bos taurus) [TaxId: 9913]
(17)
07a
d1l0lc1
C:261-379
Fold
:
Heme-binding four-helical bundle
(113)
Superfamily
:
Transmembrane di-heme cytochromes
(48)
Family
:
Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(46)
Protein domain
:
Mitochondrial cytochrome b subunit, N-terminal domain
(30)
Cow (Bos taurus) [TaxId: 9913]
(17)
08a
d1l0lc2
C:3-260
Fold
:
Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Superfamily
:
Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Family
:
Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Protein domain
:
Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(20)
Cow (Bos taurus) [TaxId: 9913]
(12)
09a
d1l0lh_
H:
Fold
:
Single transmembrane helix
(568)
Superfamily
:
Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
(36)
Family
:
Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
(27)
Protein domain
:
Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
(27)
Cow (Bos taurus) [TaxId: 9913]
(17)
10a
d1l0ld2
D:196-240
Superfamily
:
ISP transmembrane anchor
(35)
Family
:
ISP transmembrane anchor
(32)
Protein domain
:
Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region
(27)
Cow (Bos taurus) [TaxId: 9913]
(17)
11a
d1l0le2
E:1-69
Superfamily
:
Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Family
:
Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Protein domain
:
Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(25)
Cow (Bos taurus) [TaxId: 9913]
(18)
12a
d1l0lj_
J:
Superfamily
:
Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(15)
Family
:
Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(15)
Protein domain
:
Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(12)
Cow (Bos taurus) [TaxId: 9913]
(12)
13a
d1l0lk_
K:
Superfamily
:
Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Family
:
Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Protein domain
:
Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(28)
Cow (Bos taurus) [TaxId: 9913]
(18)
14a
d1l0lg_
G:
[
close SCOP info
]
CATH Domains
(12, 15)
Info
all CATH domains
01a: CATH_1l0lA02 (A:239-442)
01b: CATH_1l0lB01 (B:17-227)
01c: CATH_1l0lB02 (B:239-439)
01d: CATH_1l0lA01 (A:14-227)
02a: CATH_1l0lD02 (D:1-196)
03a: CATH_1l0lF00 (F:2-110)
04a: CATH_1l0lH00 (H:1-78)
05a: CATH_1l0lC00 (C:3-379)
06a: CATH_1l0lD01 (D:197-240)
07a: CATH_1l0lG00 (G:1-79)
08a: CATH_1l0lK00 (K:1-53)
09a: CATH_1l0lJ00 (J:2-61)
10a: CATH_1l0lE01 (E:1-64)
11a: CATH_1l0lE02 (E:65-196)
12a: CATH_1l0lI00 (I:1-57)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Cytochrome Bc1 Complex; Chain A, domain 1
(45)
Homologous Superfamily
:
Cytochrome Bc1 Complex; Chain A, domain 1
(45)
Cattle (Bos taurus)
(17)
01a
1l0lA02
A:239-442
01b
1l0lB01
B:17-227
01c
1l0lB02
B:239-439
01d
1l0lA01
A:14-227
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome Bc1 Complex; Chain D, domain 2
(279)
Homologous Superfamily
:
Cytochrome c
(279)
Cattle (Bos taurus)
(18)
02a
1l0lD02
D:1-196
Topology
:
Cytochrome Bc1 Complex; Chain F
(39)
Homologous Superfamily
:
Cytochrome Bc1 Complex; Chain F
(39)
Cattle (Bos taurus)
(17)
03a
1l0lF00
F:2-110
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.20, no name defined]
(39)
Cattle (Bos taurus)
(17)
04a
1l0lH00
H:1-78
Architecture
:
Up-down Bundle
(3216)
Topology
:
Cytochrome Bc1 Complex; Chain C
(51)
Homologous Superfamily
:
Cytochrome Bc1 Complex; Chain C
(51)
Cattle (Bos taurus)
(17)
05a
1l0lC00
C:3-379
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.100, no name defined]
(56)
Cattle (Bos taurus)
(17)
06a
1l0lD01
D:197-240
Homologous Superfamily
:
[code=1.20.5.210, no name defined]
(39)
Cattle (Bos taurus)
(17)
07a
1l0lG00
G:1-79
Homologous Superfamily
:
[code=1.20.5.220, no name defined]
(20)
Cattle (Bos taurus)
(14)
08a
1l0lK00
K:1-53
Homologous Superfamily
:
[code=1.20.5.260, no name defined]
(39)
Cattle (Bos taurus)
(17)
09a
1l0lJ00
J:2-61
Homologous Superfamily
:
[code=1.20.5.270, no name defined]
(39)
Cattle (Bos taurus)
(17)
10a
1l0lE01
E:1-64
Class
:
Mainly Beta
(13760)
Architecture
:
3-layer Sandwich
(102)
Topology
:
Rieske Iron-sulfur Protein
(99)
Homologous Superfamily
:
'Rieske'-like iron-sulphur domains
(99)
Cattle (Bos taurus)
(18)
11a
1l0lE02
E:65-196
Architecture
:
Ribbon
(789)
Topology
:
Cytochrome Bc1 Complex; Chain I
(29)
Homologous Superfamily
:
Cytochrome Bc1 Complex; Chain I
(29)
Cattle (Bos taurus)
(17)
12a
1l0lI00
I:1-57
[
close CATH info
]
Pfam Domains
(13, 15)
Info
all PFAM domains
01a: PFAM_Cytochrom_B_N_2_1l0lC01 (C:88-253)
02a: PFAM_Cytochrom_C1_1l0lD01 (D:12-230)
03a: PFAM_Rieske_1l0lE01 (E:77-188)
04a: PFAM_Peptidase_M16_1l0lA01 (A:24-171)
04b: PFAM_Peptidase_M16_1l0lB01 (B:34-180)
05a: PFAM_Peptidase_M16_C_1l0lA02 (A:176-361)
05b: PFAM_Peptidase_M16_C_1l0lB02 (B:185-364)
06a: PFAM_UcrQ_1l0lG01 (G:1-79)
07a: PFAM_Cytochrom_B_C_1l0lC02 (C:258-359)
08a: PFAM_UCR_14kD_1l0lF01 (F:3-106)
09a: PFAM_UCR_6_4kD_1l0lK01 (K:1-53)
10a: PFAM_UCR_TM_1l0lE02 (E:1-67)
11a: PFAM_UCR_UQCRX_QCR9_1l0lJ01 (J:6-60)
12a: PFAM_UCR_hinge_1l0lH01 (H:14-78)
13a: PFAM_Ubiq_Cytc_red_N_1l0lI01 (I:1-57)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
2heme_cytochrom
(31)
Family
:
Cytochrom_B_N_2
(27)
Bos taurus (Bovine)
(13)
01a
Cytochrom_B_N_2-1l0lC01
C:88-253
Clan
:
Cytochrome-c
(108)
Family
:
Cytochrom_C1
(24)
Bos taurus (Bovine)
(13)
02a
Cytochrom_C1-1l0lD01
D:12-230
Clan
:
ISP-domain
(54)
Family
:
Rieske
(53)
Bos taurus (Bovine)
(13)
03a
Rieske-1l0lE01
E:77-188
Clan
:
Peptidase_ME
(35)
Family
:
Peptidase_M16
(29)
Bos taurus (Bovine)
(13)
04a
Peptidase_M16-1l0lA01
A:24-171
04b
Peptidase_M16-1l0lB01
B:34-180
Family
:
Peptidase_M16_C
(29)
Bos taurus (Bovine)
(13)
05a
Peptidase_M16_C-1l0lA02
A:176-361
05b
Peptidase_M16_C-1l0lB02
B:185-364
Clan
:
UcrQ-like
(20)
Family
:
UcrQ
(20)
Bos taurus (Bovine)
(13)
06a
UcrQ-1l0lG01
G:1-79
Clan
:
no clan defined [family: Cytochrom_B_C]
(27)
Family
:
Cytochrom_B_C
(27)
Bos taurus (Bovine)
(13)
07a
Cytochrom_B_C-1l0lC02
C:258-359
Clan
:
no clan defined [family: UCR_14kD]
(20)
Family
:
UCR_14kD
(20)
Bos taurus (Bovine)
(13)
08a
UCR_14kD-1l0lF01
F:3-106
Clan
:
no clan defined [family: UCR_6-4kD]
(11)
Family
:
UCR_6-4kD
(11)
Bos taurus (Bovine)
(11)
09a
UCR_6-4kD-1l0lK01
K:1-53
Clan
:
no clan defined [family: UCR_TM]
(20)
Family
:
UCR_TM
(20)
Bos taurus (Bovine)
(13)
10a
UCR_TM-1l0lE02
E:1-67
Clan
:
no clan defined [family: UCR_UQCRX_QCR9]
(20)
Family
:
UCR_UQCRX_QCR9
(20)
Bos taurus (Bovine)
(13)
11a
UCR_UQCRX_QCR9-1l0lJ01
J:6-60
Clan
:
no clan defined [family: UCR_hinge]
(20)
Family
:
UCR_hinge
(20)
Bos taurus (Bovine)
(13)
12a
UCR_hinge-1l0lH01
H:14-78
Clan
:
no clan defined [family: Ubiq-Cytc-red_N]
(17)
Family
:
Ubiq-Cytc-red_N
(17)
Bos taurus (Bovine)
(13)
13a
Ubiq-Cytc-red_N-1l0lI01
I:1-57
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (352 KB)
Header - Asym.Unit
Biol.Unit 1 (338 KB)
Header - Biol.Unit 1
Biol.Unit 2 (670 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1L0L
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
