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1KZJ
Biol. Unit 3
Info
Asym.Unit (278 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (93 KB)
Biol.Unit 3 (93 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ECTS W80G/DUMP/CB3717 COMPLEX
Authors
:
T. A. Fritz, L. Liu, J. S. Finer-Moore, R. M. Stroud
Date
:
06 Feb 02 (Deposition) - 03 Jul 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Enzyme Substrate Cofactor Analog Complex, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
T. A. Fritz, L. Liu, J. S. Finer-Moore, R. M. Stroud
Tryptophan 80 And Leucine 143 Are Critical For The Hydride Transfer Step Of Thymidylate Synthase By Controlling Active Site Access.
Biochemistry V. 41 7021 2002
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID (CB3a)
1b: 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID (CB3b)
1c: 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID (CB3c)
1d: 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID (CB3d)
1e: 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID (CB3e)
1f: 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID (CB3f)
2a: N-CARBOXYMETHIONINE (CXMa)
2b: N-CARBOXYMETHIONINE (CXMb)
2c: N-CARBOXYMETHIONINE (CXMc)
2d: N-CARBOXYMETHIONINE (CXMd)
2e: N-CARBOXYMETHIONINE (CXMe)
2f: N-CARBOXYMETHIONINE (CXMf)
3a: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPa)
3b: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPb)
3c: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPc)
3d: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPd)
3e: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPe)
3f: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CB3
2
Ligand/Ion
10-PROPARGYL-5,8-DIDEAZAFOLIC ACID
2
CXM
2
Mod. Amino Acid
N-CARBOXYMETHIONINE
3
UMP
2
Ligand/Ion
2'-DEOXYURIDINE 5'-MONOPHOSPHATE
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Sites
(5, 5)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC9 (SOFTWARE)
3: BC1 (SOFTWARE)
4: BC2 (SOFTWARE)
5: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
GLU A:58 , ILE A:79 , TRP A:83 , ASP A:169 , GLY A:173 , PHE A:176 , TYR A:209 , LYS A:259 , VAL A:262 , ALA A:263 , UMP A:300 , HOH A:420 , HOH A:472 , LYS F:259
BINDING SITE FOR RESIDUE CB3 A 301
2
AC9
SOFTWARE
ARG E:21 , CYS E:146 , HIS E:147 , GLN E:165 , ARG E:166 , SER E:167 , CYS E:168 , ASP E:169 , ASN E:177 , HIS E:207 , TYR E:209 , CB3 E:309 , HOH E:546 , HOH E:595 , ARG F:126
BINDING SITE FOR RESIDUE UMP E 308
3
BC1
SOFTWARE
ILE E:79 , ASP E:169 , LEU E:172 , GLY E:173 , PHE E:176 , UMP E:308
BINDING SITE FOR RESIDUE CB3 E 309
4
BC2
SOFTWARE
ARG E:126 , ARG E:127 , ARG F:21 , CYS F:146 , HIS F:147 , GLN F:165 , ARG F:166 , SER F:167 , ASP F:169 , ASN F:177 , HIS F:207 , TYR F:209 , CB3 F:311 , HOH F:669
BINDING SITE FOR RESIDUE UMP F 310
5
BC3
SOFTWARE
LYS F:48 , HIS F:51 , SER F:54 , GLU F:58 , ILE F:79 , TRP F:83 , ASP F:169 , LEU F:172 , GLY F:173 , PHE F:176 , TYR F:209 , ALA F:263 , UMP F:310
BINDING SITE FOR RESIDUE CB3 F 311
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: THYMIDYLATE_SYNTHASE (E:126-154,F:126-154)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THYMIDYLATE_SYNTHASE
PS00091
Thymidylate synthase active site.
TYSY_ECOLI
126-154
2
-
-
-
-
E:126-154
F:126-154
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1kzja_ (A:)
1b: SCOP_d1kzjb_ (B:)
1c: SCOP_d1kzjc_ (C:)
1d: SCOP_d1kzjd_ (D:)
1e: SCOP_d1kzje_ (E:)
1f: SCOP_d1kzjf_ (F:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Thymidylate synthase/dCMP hydroxymethylase
(193)
Superfamily
:
Thymidylate synthase/dCMP hydroxymethylase
(193)
Family
:
Thymidylate synthase/dCMP hydroxymethylase
(183)
Protein domain
:
Thymidylate synthase
(137)
Escherichia coli [TaxId: 562]
(64)
1a
d1kzja_
A:
1b
d1kzjb_
B:
1c
d1kzjc_
C:
1d
d1kzjd_
D:
1e
d1kzje_
E:
1f
d1kzjf_
F:
[
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1kzjA00 (A:2-264)
1b: CATH_1kzjB00 (B:2-264)
1c: CATH_1kzjC00 (C:2-264)
1d: CATH_1kzjD00 (D:2-264)
1e: CATH_1kzjF00 (F:2-264)
1f: CATH_1kzjE00 (E:2-261)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Thymidylate Synthase; Chain A
(160)
Homologous Superfamily
:
Thymidylate Synthase, chain A
(160)
Escherichia coli. Organism_taxid: 562.
(20)
1a
1kzjA00
A:2-264
1b
1kzjB00
B:2-264
1c
1kzjC00
C:2-264
1d
1kzjD00
D:2-264
1e
1kzjF00
F:2-264
1f
1kzjE00
E:2-261
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Thymidylat_synt_1kzjF01 (F:1-264)
1b: PFAM_Thymidylat_synt_1kzjF02 (F:1-264)
1c: PFAM_Thymidylat_synt_1kzjF03 (F:1-264)
1d: PFAM_Thymidylat_synt_1kzjF04 (F:1-264)
1e: PFAM_Thymidylat_synt_1kzjF05 (F:1-264)
1f: PFAM_Thymidylat_synt_1kzjF06 (F:1-264)
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Clan
:
no clan defined [family: Thymidylat_synt]
(68)
Family
:
Thymidylat_synt
(68)
Escherichia coli (strain K12)
(17)
1a
Thymidylat_synt-1kzjF01
F:1-264
1b
Thymidylat_synt-1kzjF02
F:1-264
1c
Thymidylat_synt-1kzjF03
F:1-264
1d
Thymidylat_synt-1kzjF04
F:1-264
1e
Thymidylat_synt-1kzjF05
F:1-264
1f
Thymidylat_synt-1kzjF06
F:1-264
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Asymmetric Unit 1
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Asym.Unit (278 KB)
Header - Asym.Unit
Biol.Unit 1 (94 KB)
Header - Biol.Unit 1
Biol.Unit 2 (93 KB)
Header - Biol.Unit 2
Biol.Unit 3 (93 KB)
Header - Biol.Unit 3
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