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1KZ7
Asym. Unit
Info
Asym.Unit (181 KB)
Biol.Unit 1 (92 KB)
Biol.Unit 2 (88 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE DH/PH FRAGMENT OF MURINE DBS IN COMPLEX WITH THE PLACENTAL ISOFORM OF HUMAN CDC42
Authors
:
K. L. Rossman, D. K. Worthylake, J. T. Snyder, D. P. Siderovski, S. L. Campbell, J. Sondek
Date
:
06 Feb 02 (Deposition) - 20 Mar 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Guanine Nucleotide Exchange Factor (Gef), Small G-Protein, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. L. Rossman, D. K. Worthylake, J. T. Snyder, D. P. Siderovski, S. L. Campbell, J. Sondek
A Crystallographic View Of Interactions Between Dbs And Cdc42: Ph Domain-Assisted Guanine Nucleotide Exchange.
Embo J. V. 21 1315 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 20)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MSE
20
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_076337 (Y1064C, chain B/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_076337
Y
64
C
CDC42_HUMAN
Disease (TKS)
864309721
B
D
Y
64
1064
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(4, 8)
Info
All PROSITE Patterns/Profiles
1: RHO (B:1-176,D:1001-1176)
2: DH_2 (A:632-812,C:1632-1812)
3: DH_1 (A:761-786,C:1761-1786)
4: PH_DOMAIN (A:830-946,C:1830-1946)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RHO
PS51420
small GTPase Rho family profile.
CDC42_HUMAN
1-176
2
B:1-176
D:1001-1176
2
DH_2
PS50010
Dbl homology (DH) domain profile.
MCF2L_MOUSE
632-812
2
A:632-812
C:1632-1812
3
DH_1
PS00741
Dbl homology (DH) domain signature.
MCF2L_MOUSE
761-786
2
A:761-786
C:1761-1786
4
PH_DOMAIN
PS50003
PH domain profile.
MCF2L_MOUSE
830-946
2
A:830-946
C:1830-1946
[
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Exons
(5, 10)
Info
All Exons
Exon 1.4 (B:1-35 | D:1001-1035)
Exon 1.6 (B:36-60 | D:1036-1060)
Exon 1.7 (B:60-96 | D:1060-1096)
Exon 1.8b (B:97-162 | D:1097-1162)
Exon 1.10a (B:163-188 | D:1163-1177)
View:
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All Exon Boundaries
1: Boundary 1.1a/1.4
2: Boundary 1.4/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8b
5: Boundary 1.8b/1.10a
6: Boundary 1.10a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000400259
1a
ENSE00001132068
chr1:
22379120-22379235
116
CDC42_HUMAN
-
0
0
-
-
1.4
ENST00000400259
4
ENSE00002144782
chr1:
22404922-22405076
155
CDC42_HUMAN
1-35
35
2
B:1-35
D:1001-1035
35
35
1.6
ENST00000400259
6
ENSE00000388403
chr1:
22408215-22408287
73
CDC42_HUMAN
36-60
25
2
B:36-60
D:1036-1060
25
25
1.7
ENST00000400259
7
ENSE00000759640
chr1:
22412932-22413041
110
CDC42_HUMAN
60-96
37
2
B:60-96
D:1060-1096
37
37
1.8b
ENST00000400259
8b
ENSE00000388405
chr1:
22413162-22413359
198
CDC42_HUMAN
97-162
66
2
B:97-162
D:1097-1162
66
66
1.10a
ENST00000400259
10a
ENSE00001357650
chr1:
22417921-22419416
1496
CDC42_HUMAN
163-191
29
2
B:163-188
D:1163-1177
26
15
[
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]
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1kz7a1 (A:624-818)
1b: SCOP_d1kz7c1 (C:1624-1818)
2a: SCOP_d1kz7a2 (A:819-965)
2b: SCOP_d1kz7c2 (C:1819-1960)
3a: SCOP_d1kz7b_ (B:)
3b: SCOP_d1kz7d_ (D:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DBL homology domain (DH-domain)
(22)
Superfamily
:
DBL homology domain (DH-domain)
(22)
Family
:
DBL homology domain (DH-domain)
(19)
Protein domain
:
Dbl's big sister, Dbs
(4)
Mouse (Mus musculus) [TaxId: 10090]
(4)
1a
d1kz7a1
A:624-818
1b
d1kz7c1
C:1624-1818
Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
Pleckstrin-homology domain (PH domain)
(102)
Protein domain
:
Dbl's big sister, Dbs
(4)
Mouse (Mus musculus) [TaxId: 10090]
(4)
2a
d1kz7a2
A:819-965
2b
d1kz7c2
C:1819-1960
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
CDC42
(28)
Human (Homo sapiens) [TaxId: 9606]
(27)
3a
d1kz7b_
B:
3b
d1kz7d_
D:
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1kz7B00 (B:1-188)
1b: CATH_1kz7D00 (D:1001-1177)
2a: CATH_1kz7A01 (A:624-816)
2b: CATH_1kz7C01 (C:1624-1816)
3a: CATH_1kz7C02 (C:1817-1960)
3b: CATH_1kz7A02 (A:817-965)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
House mouse (Mus musculus)
(47)
1a
1kz7B00
B:1-188
1b
1kz7D00
D:1001-1177
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Dbl Homology Domain; Chain A
(13)
Homologous Superfamily
:
Dbl Homology Domain; Chain A
(13)
House mouse (Mus musculus)
(7)
2a
1kz7A01
A:624-816
2b
1kz7C01
C:1624-1816
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
PH-domain like
(150)
Homologous Superfamily
:
Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)
(147)
House mouse (Mus musculus)
(39)
3a
1kz7C02
C:1817-1960
3b
1kz7A02
A:817-965
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (181 KB)
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