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1KZ4
Biol. Unit 2
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Asym.Unit (121 KB)
Biol.Unit 1 (116 KB)
Biol.Unit 2 (229 KB)
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(1)
Title
:
MUTANT ENZYME W63Y LUMAZINE SYNTHASE FROM S.POMBE
Authors
:
S. Gerhardt, I. Haase, S. Steinbacher, J. T. Kaiser, M. Cushman, A. Bach R. Huber, M. Fischer
Date
:
06 Feb 02 (Deposition) - 24 Jul 02 (Release) - 23 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: A,B,C,D,E (2x)
Keywords
:
Riboflavin Biosynthesis, Lumazine Synthase, Schizosaccharomyces Pombe, Ligand Binding, Transferase
(Keyword Search:
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)
Reference
:
S. Gerhardt, I. Haase, S. Steinbacher, J. T. Kaiser, M. Cushman, A. Bacher, R. Huber, M. Fischer
The Structural Basis Of Riboflavin Binding To Schizosaccharomyces Pombe 6, 7-Dimethyl-8-Ribityllumazine Synthase.
J. Mol. Biol. V. 318 1317 2002
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Hetero Components
(1, 10)
Info
All Hetero Components
1a: PHOSPHATE ION (PO4a)
1b: PHOSPHATE ION (PO4b)
1c: PHOSPHATE ION (PO4c)
1d: PHOSPHATE ION (PO4d)
1e: PHOSPHATE ION (PO4e)
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No.
Name
Count
Type
Full Name
1
PO4
10
Ligand/Ion
PHOSPHATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:133 , GLY B:90 , SER B:91 , THR B:92 , HOH B:1004 , HOH B:1006 , HOH B:1011
BINDING SITE FOR RESIDUE PO4 B 1001
2
AC2
SOFTWARE
ARG D:133 , GLY E:90 , SER E:91 , THR E:92
BINDING SITE FOR RESIDUE PO4 E 1002
3
AC3
SOFTWARE
ARG B:133 , GLY C:90 , SER C:91 , THR C:92 , HIS C:94
BINDING SITE FOR RESIDUE PO4 C 1003
4
AC4
SOFTWARE
SER A:91 , THR A:92 , HOH A:1006 , ARG E:133
BINDING SITE FOR RESIDUE PO4 A 1004
5
AC5
SOFTWARE
ARG C:133 , GLY D:90 , SER D:91 , THR D:92 , HIS D:94 , HOH D:1007
BINDING SITE FOR RESIDUE PO4 D 1005
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d1kz4a_ (A:)
1b: SCOP_d1kz4b_ (B:)
1c: SCOP_d1kz4c_ (C:)
1d: SCOP_d1kz4d_ (D:)
1e: SCOP_d1kz4e_ (E:)
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Protein Domains
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Organisms
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)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Lumazine synthase
(27)
Superfamily
:
Lumazine synthase
(27)
Family
:
Lumazine synthase
(26)
Protein domain
:
Lumazine synthase
(19)
Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
(7)
1a
d1kz4a_
A:
1b
d1kz4b_
B:
1c
d1kz4c_
C:
1d
d1kz4d_
D:
1e
d1kz4e_
E:
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CATH Domains
(1, 5)
Info
all CATH domains
1a: CATH_1kz4E00 (E:7-158)
1b: CATH_1kz4C00 (C:11-159)
1c: CATH_1kz4A00 (A:12-158)
1d: CATH_1kz4B00 (B:12-158)
1e: CATH_1kz4D00 (D:12-158)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.960, no name defined]
(36)
Fission yeast (Schizosaccharomyces pombe)
(10)
1a
1kz4E00
E:7-158
1b
1kz4C00
C:11-159
1c
1kz4A00
A:12-158
1d
1kz4B00
B:12-158
1e
1kz4D00
D:12-158
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Pfam Domains
(1, 5)
Info
all PFAM domains
1a: PFAM_DMRL_synthase_1kz4E01 (E:15-157)
1b: PFAM_DMRL_synthase_1kz4E02 (E:15-157)
1c: PFAM_DMRL_synthase_1kz4E03 (E:15-157)
1d: PFAM_DMRL_synthase_1kz4E04 (E:15-157)
1e: PFAM_DMRL_synthase_1kz4E05 (E:15-157)
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Clan
:
no clan defined [family: DMRL_synthase]
(19)
Family
:
DMRL_synthase
(19)
Schizosaccharomyces pombe (strain ATCC 38366 / 972) (Fission yeast)
(7)
1a
DMRL_synthase-1kz4E01
E:15-157
1b
DMRL_synthase-1kz4E02
E:15-157
1c
DMRL_synthase-1kz4E03
E:15-157
1d
DMRL_synthase-1kz4E04
E:15-157
1e
DMRL_synthase-1kz4E05
E:15-157
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Show PDB file:
Asym.Unit (121 KB)
Header - Asym.Unit
Biol.Unit 1 (116 KB)
Header - Biol.Unit 1
Biol.Unit 2 (229 KB)
Header - Biol.Unit 2
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