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1KYO
Asym. Unit
Info
Asym.Unit (733 KB)
Biol.Unit 1 (719 KB)
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(1)
Title
:
YEAST CYTOCHROME BC1 COMPLEX WITH BOUND SUBSTRATE CYTOCHROME C
Authors
:
C. Lange, C. Hunte
Date
:
05 Feb 02 (Deposition) - 06 Mar 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.97
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W (1x)
Keywords
:
Multisubunit Membrane Protein Complex, Enzyme Substrate Complex, Electron Transfer Complex, Antibody Fv Fragment Mediated Crystallization, Oxidoreductase/Electron Transport Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Lange, C. Hunte
Crystal Structure Of The Yeast Cytochrome Bc1 Complex With Its Bound Substrate Cytochrome C.
Proc. Natl. Acad. Sci. Usa V. 99 2800 2002
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 12)
Info
All Hetero Components
1a: FE2/S2 (INORGANIC) CLUSTER (FESa)
1b: FE2/S2 (INORGANIC) CLUSTER (FESb)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
2e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
2f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
2g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
3a: N-TRIMETHYLLYSINE (M3La)
4a: STIGMATELLIN A (SMAa)
4b: STIGMATELLIN A (SMAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FES
2
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
2
HEM
7
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
M3L
1
Mod. Amino Acid
N-TRIMETHYLLYSINE
4
SMA
2
Ligand/Ion
STIGMATELLIN A
[
close Hetero Component info
]
Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN C:43 , GLY C:47 , ILE C:48 , MET C:50 , ALA C:51 , ARG C:79 , HIS C:82 , ALA C:83 , THR C:127 , ALA C:128 , GLY C:131 , TYR C:132 , VAL C:135 , HIS C:183 , TYR C:184 , PRO C:187
BINDING SITE FOR RESIDUE HEM C 501
02
AC2
SOFTWARE
TRP C:30 , GLY C:33 , HIS C:96 , MET C:97 , LYS C:99 , SER C:105 , LEU C:113 , GLY C:117 , VAL C:118 , ILE C:120 , HIS C:197 , LEU C:201 , SER C:206 , SER C:207
BINDING SITE FOR RESIDUE HEM C 502
03
AC3
SOFTWARE
VAL D:100 , CYS D:101 , CYS D:104 , HIS D:105 , ASN D:169 , ILE D:180 , ARG D:184 , TYR D:190 , PHE D:218 , ALA D:224 , MET D:225 , VAL D:228
BINDING SITE FOR RESIDUE HEM D 503
04
AC4
SOFTWARE
CYS E:159 , HIS E:161 , LEU E:162 , CYS E:178 , HIS E:181 , SER E:183
BINDING SITE FOR RESIDUE FES E 504
05
AC5
SOFTWARE
ILE C:125 , ALA C:126 , GLY C:143 , VAL C:146 , ILE C:147 , LEU C:165 , VAL C:270 , PRO C:271 , GLU C:272 , PHE C:278 , TYR C:279 , MET C:295 , HIS P:181
BINDING SITE FOR RESIDUE SMA C 505
06
AC6
SOFTWARE
GLN N:43 , GLY N:47 , ILE N:48 , MET N:50 , ARG N:79 , HIS N:82 , ALA N:83 , PHE N:89 , ALA N:128 , GLY N:131 , TYR N:132 , VAL N:135 , HIS N:183 , TYR N:184 , PRO N:187
BINDING SITE FOR RESIDUE HEM N 521
07
AC7
SOFTWARE
TRP N:30 , GLY N:33 , LEU N:36 , HIS N:96 , LYS N:99 , SER N:105 , LEU N:113 , TRP N:114 , GLY N:117 , VAL N:194 , HIS N:197 , LEU N:201 , SER N:206 , SER N:207
BINDING SITE FOR RESIDUE HEM N 522
08
AC8
SOFTWARE
VAL O:100 , CYS O:101 , CYS O:104 , HIS O:105 , ASN O:169 , PRO O:175 , ARG O:184 , TYR O:190 , ILE O:191 , PHE O:218 , ALA O:224 , MET O:225
BINDING SITE FOR RESIDUE HEM O 523
09
AC9
SOFTWARE
CYS P:159 , HIS P:161 , LEU P:162 , CYS P:178 , CYS P:180 , HIS P:181 , SER P:183
BINDING SITE FOR RESIDUE FES P 524
10
BC1
SOFTWARE
HIS E:181 , THR N:122 , ILE N:125 , ALA N:126 , PHE N:129 , LEU N:130 , MET N:139 , VAL N:146 , ILE N:147 , ILE N:269 , PRO N:271 , GLU N:272 , TYR N:279 , MET N:295 , PHE N:296
BINDING SITE FOR RESIDUE SMA N 525
11
BC2
SOFTWARE
ARG W:18 , CYS W:19 , CYS W:22 , HIS W:23 , VAL W:33 , GLY W:34 , ILE W:40 , SER W:45 , GLY W:46 , TYR W:51 , TYR W:53 , THR W:54 , ASN W:57 , TRP W:64 , TYR W:72 , THR W:83 , LYS W:84 , MET W:85 , PHE W:87
BINDING SITE FOR RESIDUE HEM W 526
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_CYB_YEAST_001 (G131S, chain C/N, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_CYB_YEAST_001
*
G
131
S
CYB_YEAST
---
---
C/N
G
131
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(5, 11)
Info
All PROSITE Patterns/Profiles
1: CYTB_NTER (C:1-210,N:1-210)
2: CYTC (W:6-107,D:88-241,O:88-241)
3: INSULINASE (B:37-59,M:37-59)
4: RIESKE (E:123-214,P:123-214)
5: CYTB_CTER (C:211-381,N:211-381)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTB_NTER
PS51002
Cytochrome b/b6 N-terminal region profile.
CYB_YEAST
1-210
2
C:1-210
N:1-210
2
CYTC
PS51007
Cytochrome c family profile.
CYC1_YEAST
7-108
1
W:6-107
CY1_YEAST
88-241
2
D:88-241
O:88-241
3
INSULINASE
PS00143
Insulinase family, zinc-binding region signature.
QCR2_YEAST
37-59
2
B:37-59
M:37-59
4
RIESKE
PS51296
Rieske [2Fe-2S] iron-sulfur domain profile.
UCRI_YEAST
123-214
2
E:123-214
P:123-214
5
CYTB_CTER
PS51003
Cytochrome b/b6 C-terminal region profile.
CYB_YEAST
211-381
2
C:211-381
N:211-381
[
close PROSITE info
]
Exons
(15, 29)
Info
All Exons
Exon 1.1 (C:1-139 | N:1-139)
Exon 1.2 (C:139-143 | N:139-143)
Exon 1.3 (C:144-169 | N:144-169)
Exon 1.4 (C:169-252 | N:169-252)
Exon 1.5 (C:253-269 | N:253-269)
Exon 1.6 (C:270-385 | N:270-385)
Exon 2.1 (A:27-456 (gaps) | L:27-456 (gaps))
Exon 3.1 (G:3-127 | R:3-127)
Exon 4.1 (E:31-215 | P:31-215)
Exon 5.1 (F:74-147 (gaps) | Q:74-147 (gaps))
Exon 6.2 (I:4-56 | T:4-56)
Exon 7.1 (H:2-94 | S:2-94)
Exon 8.1 (W:1-108)
Exon 9.1 (D:62-306 | O:62-306)
Exon 10.1 (B:17-368 | M:17-368)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/-
08: Boundary -/2.1
09: Boundary 2.1/-
10: Boundary -/3.1
11: Boundary 3.1/-
12: Boundary -/4.1
13: Boundary 4.1/-
14: Boundary -/5.1
15: Boundary 5.1/-
16: Boundary 6.1/6.2
17: Boundary 6.2/-
18: Boundary -/7.1
19: Boundary 7.1/-
20: Boundary -/8.1
21: Boundary 8.1/-
22: Boundary -/9.1
23: Boundary 9.1/-
24: Boundary -/10.1
25: Boundary 10.1/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
Q0105
1
Q0105.1
Mito:36540-36954
415
CYB_YEAST
1-139
139
2
C:1-139
N:1-139
139
139
1.2
Q0105
2
Q0105.2
Mito:37723-37736
14
CYB_YEAST
139-143
5
2
C:139-143
N:139-143
5
5
1.3
Q0105
3
Q0105.3
Mito:39141-39217
77
CYB_YEAST
144-169
26
2
C:144-169
N:144-169
26
26
1.4
Q0105
4
Q0105.4
Mito:40841-41090
250
CYB_YEAST
169-252
84
2
C:169-252
N:169-252
84
84
1.5
Q0105
5
Q0105.5
Mito:42508-42558
51
CYB_YEAST
253-269
17
2
C:253-269
N:253-269
17
17
1.6
Q0105
6
Q0105.6
Mito:43297-43647
351
CYB_YEAST
270-385
116
2
C:270-385
N:270-385
116
116
2.1
YBL045C
1
YBL045C.1
II:135519-134146
1374
QCR1_YEAST
1-457
457
2
A:27-456 (gaps)
L:27-456 (gaps)
431
431
3.1
YDR529C
1
YDR529C.1
IV:1496541-1496158
384
QCR7_YEAST
1-127
127
2
G:3-127
R:3-127
125
125
4.1
YEL024W
1
YEL024W.1
V:107260-107907
648
UCRI_YEAST
1-215
215
2
E:31-215
P:31-215
185
185
5.1
YFR033C
1
YFR033C.1
VI:224757-224314
444
QCR6_YEAST
1-147
147
2
F:74-147 (gaps)
Q:74-147 (gaps)
81
81
6.1
YGR183C
1
YGR183C.1
VII:859481-859479
3
QCR9_YEAST
1-1
1
0
-
-
6.2
YGR183C
2
YGR183C.2
VII:859265-859068
198
QCR9_YEAST
2-66
65
2
I:4-56
T:4-56
53
53
7.1
YJL166W
1
YJL166W.1
X:106428-106712
285
QCR8_YEAST
1-94
94
2
H:2-94
S:2-94
93
93
8.1
YJR048W
1
YJR048W.1
X:526327-526656
330
CYC1_YEAST
1-109
109
1
W:1-108
108
9.1
YOR065W
1
YOR065W.1
XV:447441-448370
930
CY1_YEAST
1-309
309
2
D:62-306
O:62-306
245
245
10.1
YPR191W
1
YPR191W.1
XVI:919377-920483
1107
QCR2_YEAST
1-368
368
2
B:17-368
M:17-368
352
352
[
close EXON info
]
SCOP Domains
(15, 33)
Info
All SCOP Domains
01a: SCOP_d1kyod1 (D:62-260)
01b: SCOP_d1kyoo1 (O:62-260)
02a: SCOP_d1kyow_ (W:)
03a: SCOP_d1kyoj_ (J:)
03b: SCOP_d1kyou_ (U:)
04a: SCOP_d1kyok_ (K:)
04b: SCOP_d1kyov_ (V:)
05a: SCOP_d1kyoe1 (E:87-215)
05b: SCOP_d1kyop1 (P:87-215)
06a: SCOP_d1kyoa1 (A:27-239)
06b: SCOP_d1kyoa2 (A:240-456)
06c: SCOP_d1kyol1 (L:27-239)
06d: SCOP_d1kyol2 (L:240-456)
07a: SCOP_d1kyob1 (B:17-218)
07b: SCOP_d1kyob2 (B:219-368)
07c: SCOP_d1kyom1 (M:17-218)
07d: SCOP_d1kyom2 (M:219-368)
08a: SCOP_d1kyog_ (G:)
08b: SCOP_d1kyor_ (R:)
09a: SCOP_d1kyoc2 (C:262-385)
09b: SCOP_d1kyon2 (N:262-385)
10a: SCOP_d1kyoc3 (C:1-261)
10b: SCOP_d1kyon3 (N:1-261)
11a: SCOP_d1kyof_ (F:)
11b: SCOP_d1kyoq_ (Q:)
12a: SCOP_d1kyod2 (D:261-306)
12b: SCOP_d1kyoo2 (O:261-306)
13a: SCOP_d1kyoe2 (E:31-86)
13b: SCOP_d1kyop2 (P:31-86)
14a: SCOP_d1kyoi_ (I:)
14b: SCOP_d1kyot_ (T:)
15a: SCOP_d1kyoh_ (H:)
15b: SCOP_d1kyos_ (S:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome c
(308)
Superfamily
:
Cytochrome c
(308)
Family
:
Cytochrome bc1 domain
(36)
Protein domain
:
Cytochrome bc1 domain
(27)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(7)
01a
d1kyod1
D:62-260
01b
d1kyoo1
O:62-260
Family
:
monodomain cytochrome c
(197)
Protein domain
:
Mitochondrial cytochrome c
(81)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(49)
02a
d1kyow_
W:
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
(38)
03a
d1kyoj_
J:
03b
d1kyou_
U:
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 4 [TaxId: 10090]
(211)
04a
d1kyok_
K:
04b
d1kyov_
V:
Fold
:
ISP domain
(115)
Superfamily
:
ISP domain
(115)
Family
:
Rieske iron-sulfur protein (ISP)
(50)
Protein domain
:
ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain
(28)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(7)
05a
d1kyoe1
E:87-215
05b
d1kyop1
P:87-215
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
LuxS/MPP-like metallohydrolase
(89)
Superfamily
:
LuxS/MPP-like metallohydrolase
(89)
Family
:
MPP-like
(65)
Protein domain
:
Cytochrome bc1 core subunit 1
(27)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(7)
06a
d1kyoa1
A:27-239
06b
d1kyoa2
A:240-456
06c
d1kyol1
L:27-239
06d
d1kyol2
L:240-456
Protein domain
:
Cytochrome bc1 core subunit 2
(27)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(7)
07a
d1kyob1
B:17-218
07b
d1kyob2
B:219-368
07c
d1kyom1
M:17-218
07d
d1kyom2
M:219-368
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Superfamily
:
14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Family
:
14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Protein domain
:
14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(21)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(4)
08a
d1kyog_
G:
08b
d1kyor_
R:
Fold
:
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(46)
Superfamily
:
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(46)
Family
:
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(39)
Protein domain
:
Mitochondrial cytochrome b subunit, C-terminal domain
(30)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(5)
09a
d1kyoc2
C:262-385
09b
d1kyon2
N:262-385
Fold
:
Heme-binding four-helical bundle
(113)
Superfamily
:
Transmembrane di-heme cytochromes
(48)
Family
:
Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(46)
Protein domain
:
Mitochondrial cytochrome b subunit, N-terminal domain
(30)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(5)
10a
d1kyoc3
C:1-261
10b
d1kyon3
N:1-261
Fold
:
Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Superfamily
:
Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Family
:
Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Protein domain
:
Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(20)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(5)
11a
d1kyof_
F:
11b
d1kyoq_
Q:
Fold
:
Single transmembrane helix
(568)
Superfamily
:
Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
(36)
Family
:
Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
(27)
Protein domain
:
Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
(27)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(7)
12a
d1kyod2
D:261-306
12b
d1kyoo2
O:261-306
Superfamily
:
ISP transmembrane anchor
(35)
Family
:
ISP transmembrane anchor
(32)
Protein domain
:
Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region
(27)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(7)
13a
d1kyoe2
E:31-86
13b
d1kyop2
P:31-86
Superfamily
:
Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Family
:
Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Protein domain
:
Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(25)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(4)
14a
d1kyoi_
I:
14b
d1kyot_
T:
Superfamily
:
Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Family
:
Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(36)
Protein domain
:
Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
(28)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(7)
15a
d1kyoh_
H:
15b
d1kyos_
S:
[
close SCOP info
]
CATH Domains
(11, 31)
Info
all CATH domains
01a: CATH_1kyoB01 (B:17-227)
01b: CATH_1kyoA01 (A:27-227)
01c: CATH_1kyoL01 (L:27-227)
01d: CATH_1kyoA02 (A:234-456)
01e: CATH_1kyoL02 (L:234-456)
01f: CATH_1kyoM01 (M:17-227)
01g: CATH_1kyoB02 (B:234-368)
01h: CATH_1kyoM02 (M:234-368)
02a: CATH_1kyoW00 (W:1-108)
02b: CATH_1kyoD02 (D:65-261)
02c: CATH_1kyoO02 (O:65-261)
03a: CATH_1kyoG00 (G:3-127)
03b: CATH_1kyoR00 (R:3-127)
04a: CATH_1kyoF00 (F:74-147)
04b: CATH_1kyoQ00 (Q:74-147)
05a: CATH_1kyoC00 (C:1-385)
05b: CATH_1kyoN00 (N:1-385)
06a: CATH_1kyoD01 (D:262-306)
06b: CATH_1kyoO01 (O:262-306)
07a: CATH_1kyoH00 (H:2-94)
07b: CATH_1kyoS00 (S:2-94)
08a: CATH_1kyoI00 (I:4-56)
08b: CATH_1kyoT00 (T:4-56)
09a: CATH_1kyoE01 (E:31-85)
09b: CATH_1kyoP01 (P:31-85)
10a: CATH_1kyoE02 (E:86-215)
10b: CATH_1kyoP02 (P:86-215)
11a: CATH_1kyoK00 (K:1-107)
11b: CATH_1kyoJ00 (J:1-127)
11c: CATH_1kyoU00 (U:1-127)
11d: CATH_1kyoV00 (V:1-107)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Cytochrome Bc1 Complex; Chain A, domain 1
(45)
Homologous Superfamily
:
Cytochrome Bc1 Complex; Chain A, domain 1
(45)
Baker's yeast (Saccharomyces cerevisiae)
(9)
01a
1kyoB01
B:17-227
01b
1kyoA01
A:27-227
01c
1kyoL01
L:27-227
01d
1kyoA02
A:234-456
01e
1kyoL02
L:234-456
01f
1kyoM01
M:17-227
01g
1kyoB02
B:234-368
01h
1kyoM02
M:234-368
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome Bc1 Complex; Chain D, domain 2
(279)
Homologous Superfamily
:
Cytochrome c
(279)
Baker's yeast (Saccharomyces cerevisiae)
(49)
02a
1kyoW00
W:1-108
02b
1kyoD02
D:65-261
02c
1kyoO02
O:65-261
Topology
:
Cytochrome Bc1 Complex; Chain F
(39)
Homologous Superfamily
:
Cytochrome Bc1 Complex; Chain F
(39)
Baker's yeast (Saccharomyces cerevisiae)
(5)
03a
1kyoG00
G:3-127
03b
1kyoR00
R:3-127
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.20, no name defined]
(39)
Baker's yeast (Saccharomyces cerevisiae)
(5)
04a
1kyoF00
F:74-147
04b
1kyoQ00
Q:74-147
Architecture
:
Up-down Bundle
(3216)
Topology
:
Cytochrome Bc1 Complex; Chain C
(51)
Homologous Superfamily
:
Cytochrome Bc1 Complex; Chain C
(51)
Baker's yeast (Saccharomyces cerevisiae)
(5)
05a
1kyoC00
C:1-385
05b
1kyoN00
N:1-385
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.100, no name defined]
(56)
Baker's yeast (Saccharomyces cerevisiae)
(5)
06a
1kyoD01
D:262-306
06b
1kyoO01
O:262-306
Homologous Superfamily
:
[code=1.20.5.210, no name defined]
(39)
Baker's yeast (Saccharomyces cerevisiae)
(5)
07a
1kyoH00
H:2-94
07b
1kyoS00
S:2-94
Homologous Superfamily
:
[code=1.20.5.260, no name defined]
(39)
Baker's yeast (Saccharomyces cerevisiae)
(5)
08a
1kyoI00
I:4-56
08b
1kyoT00
T:4-56
Homologous Superfamily
:
[code=1.20.5.270, no name defined]
(39)
Baker's yeast (Saccharomyces cerevisiae)
(5)
09a
1kyoE01
E:31-85
09b
1kyoP01
P:31-85
Class
:
Mainly Beta
(13760)
Architecture
:
3-layer Sandwich
(102)
Topology
:
Rieske Iron-sulfur Protein
(99)
Homologous Superfamily
:
'Rieske'-like iron-sulphur domains
(99)
Baker's yeast (Saccharomyces cerevisiae)
(5)
10a
1kyoE02
E:86-215
10b
1kyoP02
P:86-215
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Baker's yeast (Saccharomyces cerevisiae)
(5)
11a
1kyoK00
K:1-107
11b
1kyoJ00
J:1-127
11c
1kyoU00
U:1-127
11d
1kyoV00
V:1-107
[
close CATH info
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Pfam Domains
(12, 27)
Info
all PFAM domains
01a: PFAM_Cytochrom_B_N_2_1kyoN01 (N:87-254)
01b: PFAM_Cytochrom_B_N_2_1kyoN02 (N:87-254)
02a: PFAM_Cytochrom_C_1kyoW01 (W:8-106)
03a: PFAM_Cytochrom_C1_1kyoO01 (O:76-295)
03b: PFAM_Cytochrom_C1_1kyoO02 (O:76-295)
04a: PFAM_Rieske_1kyoP01 (P:116-208)
04b: PFAM_Rieske_1kyoP02 (P:116-208)
05a: PFAM_Peptidase_M16_1kyoL01 (L:37-181)
05b: PFAM_Peptidase_M16_1kyoL02 (L:37-181)
05c: PFAM_Peptidase_M16_1kyoM01 (M:17-163)
05d: PFAM_Peptidase_M16_1kyoM02 (M:17-163)
06a: PFAM_Peptidase_M16_C_1kyoL03 (L:186-369)
06b: PFAM_Peptidase_M16_C_1kyoL04 (L:186-369)
06c: PFAM_Peptidase_M16_C_1kyoM03 (M:166-327)
06d: PFAM_Peptidase_M16_C_1kyoM04 (M:166-327)
07a: PFAM_UcrQ_1kyoS01 (S:12-91)
07b: PFAM_UcrQ_1kyoS02 (S:12-91)
08a: PFAM_Cytochrom_B_C_1kyoN03 (N:259-360)
08b: PFAM_Cytochrom_B_C_1kyoN04 (N:259-360)
09a: PFAM_UCR_14kD_1kyoR01 (R:15-119)
09b: PFAM_UCR_14kD_1kyoR02 (R:15-119)
10a: PFAM_UCR_TM_1kyoP03 (P:31-87)
10b: PFAM_UCR_TM_1kyoP04 (P:31-87)
11a: PFAM_UCR_UQCRX_QCR9_1kyoT01 (T:4-56)
11b: PFAM_UCR_UQCRX_QCR9_1kyoT02 (T:4-56)
12a: PFAM_UCR_hinge_1kyoQ01 (Q:75-147)
12b: PFAM_UCR_hinge_1kyoQ02 (Q:75-147)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
2heme_cytochrom
(31)
Family
:
Cytochrom_B_N_2
(27)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(3)
01a
Cytochrom_B_N_2-1kyoN01
N:87-254
01b
Cytochrom_B_N_2-1kyoN02
N:87-254
Clan
:
Cytochrome-c
(108)
Family
:
Cytochrom_C
(54)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(18)
02a
Cytochrom_C-1kyoW01
W:8-106
Family
:
Cytochrom_C1
(24)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(3)
03a
Cytochrom_C1-1kyoO01
O:76-295
03b
Cytochrom_C1-1kyoO02
O:76-295
Clan
:
ISP-domain
(54)
Family
:
Rieske
(53)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(3)
04a
Rieske-1kyoP01
P:116-208
04b
Rieske-1kyoP02
P:116-208
Clan
:
Peptidase_ME
(35)
Family
:
Peptidase_M16
(29)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(3)
05a
Peptidase_M16-1kyoL01
L:37-181
05b
Peptidase_M16-1kyoL02
L:37-181
05c
Peptidase_M16-1kyoM01
M:17-163
05d
Peptidase_M16-1kyoM02
M:17-163
Family
:
Peptidase_M16_C
(29)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(3)
06a
Peptidase_M16_C-1kyoL03
L:186-369
06b
Peptidase_M16_C-1kyoL04
L:186-369
06c
Peptidase_M16_C-1kyoM03
M:166-327
06d
Peptidase_M16_C-1kyoM04
M:166-327
Clan
:
UcrQ-like
(20)
Family
:
UcrQ
(20)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(3)
07a
UcrQ-1kyoS01
S:12-91
07b
UcrQ-1kyoS02
S:12-91
Clan
:
no clan defined [family: Cytochrom_B_C]
(27)
Family
:
Cytochrom_B_C
(27)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(3)
08a
Cytochrom_B_C-1kyoN03
N:259-360
08b
Cytochrom_B_C-1kyoN04
N:259-360
Clan
:
no clan defined [family: UCR_14kD]
(20)
Family
:
UCR_14kD
(20)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(3)
09a
UCR_14kD-1kyoR01
R:15-119
09b
UCR_14kD-1kyoR02
R:15-119
Clan
:
no clan defined [family: UCR_TM]
(20)
Family
:
UCR_TM
(20)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(3)
10a
UCR_TM-1kyoP03
P:31-87
10b
UCR_TM-1kyoP04
P:31-87
Clan
:
no clan defined [family: UCR_UQCRX_QCR9]
(20)
Family
:
UCR_UQCRX_QCR9
(20)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(3)
11a
UCR_UQCRX_QCR9-1kyoT01
T:4-56
11b
UCR_UQCRX_QCR9-1kyoT02
T:4-56
Clan
:
no clan defined [family: UCR_hinge]
(20)
Family
:
UCR_hinge
(20)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(3)
12a
UCR_hinge-1kyoQ01
Q:75-147
12b
UCR_hinge-1kyoQ02
Q:75-147
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