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Asym. Unit
Info
Asym.Unit (90 KB)
Biol.Unit 1 (81 KB)
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(1)
Title
:
RAT MANNOSE PROTEIN A (H189V I207V) COMPLEXED WITH MAN-A13-MAN
Authors
:
K. K. Ng, A. R. Kolatkar, S. Park-Snyder, H. Feinberg, D. A. Clark, K. Dri W. I. Weis
Date
:
30 Jan 02 (Deposition) - 05 Jul 02 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Lectin, C-Type Lectin, Calcium-Binding Protein, Immune System, Sugar Binding Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. K. Ng, A. R. Kolatkar, S. Park-Snyder, H. Feinberg, D. A. Clark, K. Drickamer, W. I. Weis
Orientation Of Bound Ligands In Mannose-Binding Proteins. Implications For Multivalent Ligand Recognition.
J. Biol. Chem. V. 277 16088 2002
[
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
9
Ligand/Ion
CALCIUM ION
2
CL
3
Ligand/Ion
CHLORIDE ION
3
MAN
6
Ligand/Ion
ALPHA-D-MANNOSE
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:189 , MAN A:502 , HOH A:523 , HOH A:629 , LYS B:97 , GLU C:130
BINDING SITE FOR RESIDUE MAN A 501
02
AC2
SOFTWARE
GLU A:185 , ASN A:187 , GLU A:193 , ASN A:205 , ASP A:206 , MAN A:501 , CA A:504 , HOH A:527 , HOH A:539
BINDING SITE FOR RESIDUE MAN A 502
03
AC3
SOFTWARE
MAN B:602 , HOH B:723
BINDING SITE FOR RESIDUE MAN B 601
04
AC4
SOFTWARE
GLU B:185 , ASN B:187 , VAL B:189 , GLU B:193 , ASN B:205 , ASP B:206 , MAN B:601 , CA B:604 , HOH B:720 , HOH B:736
BINDING SITE FOR RESIDUE MAN B 602
05
AC5
SOFTWARE
ASN C:205 , MAN C:702
BINDING SITE FOR RESIDUE MAN C 701
06
AC6
SOFTWARE
GLU C:185 , ASN C:187 , GLU C:193 , ASN C:205 , ASP C:206 , VAL C:207 , MAN C:701 , CA C:704 , HOH C:781
BINDING SITE FOR RESIDUE MAN C 702
07
AC7
SOFTWARE
ASP A:161 , GLU A:165 , ASP A:188 , GLU A:193 , ASP A:194 , HOH A:594
BINDING SITE FOR RESIDUE CA A 503
08
AC8
SOFTWARE
GLU A:185 , ASN A:187 , GLU A:193 , ASN A:205 , ASP A:206 , MAN A:502
BINDING SITE FOR RESIDUE CA A 504
09
AC9
SOFTWARE
GLU A:84 , GLU A:165 , ASP A:194 , HOH A:516 , HOH A:595 , HOH A:643
BINDING SITE FOR RESIDUE CA A 505
10
BC1
SOFTWARE
ASP A:194 , SER A:208 , CYS A:209
BINDING SITE FOR RESIDUE CL A 506
11
BC2
SOFTWARE
ASP B:161 , GLU B:165 , ASP B:188 , GLU B:193 , ASP B:194 , HOH B:714
BINDING SITE FOR RESIDUE CA B 603
12
BC3
SOFTWARE
GLU B:185 , ASN B:187 , GLU B:193 , ASN B:205 , ASP B:206 , MAN B:602
BINDING SITE FOR RESIDUE CA B 604
13
BC4
SOFTWARE
GLU B:165 , ASP B:194 , HOH B:608 , HOH B:636 , HOH B:662 , HOH B:663
BINDING SITE FOR RESIDUE CA B 605
14
BC5
SOFTWARE
ASP B:194 , CYS B:209
BINDING SITE FOR RESIDUE CL B 606
15
BC6
SOFTWARE
ASP C:161 , GLU C:165 , ASP C:188 , GLU C:193 , ASP C:194 , HOH C:707
BINDING SITE FOR RESIDUE CA C 703
16
BC7
SOFTWARE
GLU C:185 , ASN C:187 , GLU C:193 , ASN C:205 , ASP C:206 , MAN C:702
BINDING SITE FOR RESIDUE CA C 704
17
BC8
SOFTWARE
GLU C:84 , GLU C:165 , ASP C:194 , HOH C:720 , HOH C:739 , HOH C:762
BINDING SITE FOR RESIDUE CA C 705
18
BC9
SOFTWARE
ASP C:194 , CYS C:209 , GLN C:210
BINDING SITE FOR RESIDUE CL C 706
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_2 (A:106-218,B:106-218,C:106-218)
2: C_TYPE_LECTIN_1 (A:195-217,B:195-217,C:195-217)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_2
PS50041
C-type lectin domain profile.
MBL1_RAT
123-235
3
A:106-218
B:106-218
C:106-218
2
C_TYPE_LECTIN_1
PS00615
C-type lectin domain signature.
MBL1_RAT
212-234
3
A:195-217
B:195-217
C:195-217
[
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]
Exons
(3, 9)
Info
All Exons
Exon 1.3 (A:73-73 | B:73-73 | C:73-73)
Exon 1.4 (A:73-98 | B:73-98 | C:73-98)
Exon 1.5 (A:98-221 | B:98-221 | C:98-221)
View:
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All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000015723
1
ENSRNOE00000411163
chr16:
17591820-17591881
62
MBL1_RAT
-
0
0
-
-
1.2
ENSRNOT00000015723
2
ENSRNOE00000110617
chr16:
17593783-17593943
161
MBL1_RAT
1-51
51
0
-
-
1.3
ENSRNOT00000015723
3
ENSRNOE00000110943
chr16:
17594301-17594417
117
MBL1_RAT
51-90
40
3
A:73-73
B:73-73
C:73-73
1
1
1
1.4
ENSRNOT00000015723
4
ENSRNOE00000111237
chr16:
17596168-17596242
75
MBL1_RAT
90-115
26
3
A:73-98
B:73-98
C:73-98
26
26
26
1.5
ENSRNOT00000015723
5
ENSRNOE00000111555
chr16:
17597083-17597859
777
MBL1_RAT
115-238
124
3
A:98-221
B:98-221
C:98-221
124
124
124
[
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SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1kx0a1 (A:105-221)
1b: SCOP_d1kx0b1 (B:105-221)
1c: SCOP_d1kx0c1 (C:105-221)
2a: SCOP_d1kx0a2 (A:73-104)
2b: SCOP_d1kx0b2 (B:73-104)
2c: SCOP_d1kx0c2 (C:73-104)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
C-type lectin domain
(182)
Protein domain
:
Mannose-binding protein A, C-lectin domain
(39)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(38)
1a
d1kx0a1
A:105-221
1b
d1kx0b1
B:105-221
1c
d1kx0c1
C:105-221
Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
Triple coiled coil domain of C-type lectins
(54)
Family
:
Triple coiled coil domain of C-type lectins
(54)
Protein domain
:
Mannose-binding protein A
(23)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(22)
2a
d1kx0a2
A:73-104
2b
d1kx0b2
B:73-104
2c
d1kx0c2
C:73-104
[
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1kx0A00 (A:73-221)
1b: CATH_1kx0B00 (B:73-221)
1c: CATH_1kx0C00 (C:73-221)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Mannose-Binding Protein A; Chain A
(180)
Homologous Superfamily
:
Mannose-Binding Protein A, subunit A
(180)
Norway rat (Rattus norvegicus)
(32)
1a
1kx0A00
A:73-221
1b
1kx0B00
B:73-221
1c
1kx0C00
C:73-221
[
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_Lectin_C_1kx0C01 (C:117-219)
1b: PFAM_Lectin_C_1kx0C02 (C:117-219)
1c: PFAM_Lectin_C_1kx0C03 (C:117-219)
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Clan
:
C_Lectin
(98)
Family
:
Lectin_C
(85)
Rattus norvegicus (Rat)
(33)
1a
Lectin_C-1kx0C01
C:117-219
1b
Lectin_C-1kx0C02
C:117-219
1c
Lectin_C-1kx0C03
C:117-219
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