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1KWU
Asym. Unit
Info
Asym.Unit (87 KB)
Biol.Unit 1 (81 KB)
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(1)
Title
:
RAT MANNOSE BINDING PROTEIN A COMPLEXED WITH A-ME-MAN
Authors
:
K. K. Ng, A. R. Kolatkar, S. Park-Snyder, H. Feinberg, D. A. Clark, K. Drickamer, W. I. Weis
Date
:
30 Jan 02 (Deposition) - 05 Jul 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Lectin, C-Type Lectin, Calcium-Binding Protein, Immune System, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. K. Ng, A. R. Kolatkar, S. Park-Snyder, H. Feinberg, D. A. Clark, K. Drickamer, W. I. Weis
Orientation Of Bound Ligands In Mannose-Binding Proteins. Implications For Multivalent Ligand Recognition.
J. Biol. Chem. V. 277 16088 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 16)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
3a: O1-METHYL-MANNOSE (MMAa)
3b: O1-METHYL-MANNOSE (MMAb)
3c: O1-METHYL-MANNOSE (MMAc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
10
Ligand/Ion
CALCIUM ION
2
CL
3
Ligand/Ion
CHLORIDE ION
3
MMA
3
Ligand/Ion
O1-METHYL-MANNOSE
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:185 , ASN A:187 , GLU A:193 , ASN A:205 , ASP A:206 , CA A:503 , HOH A:659 , HOH A:660 , HOH A:760
BINDING SITE FOR RESIDUE MMA A 501
02
AC2
SOFTWARE
GLU B:185 , ASN B:187 , HIS B:189 , GLU B:193 , ASN B:205 , ASP B:206 , ILE B:207 , CA B:603 , HOH B:721 , HOH B:727
BINDING SITE FOR RESIDUE MMA B 601
03
AC3
SOFTWARE
GLU C:185 , ASN C:187 , HIS C:189 , GLU C:193 , ASN C:205 , ASP C:206 , CA C:703 , HOH C:783 , HOH C:799 , HOH C:801
BINDING SITE FOR RESIDUE MMA C 701
04
AC4
SOFTWARE
ASP A:161 , GLU A:165 , ASP A:188 , GLU A:193 , ASP A:194 , HOH A:627
BINDING SITE FOR RESIDUE CA A 502
05
AC5
SOFTWARE
GLU A:185 , ASN A:187 , GLU A:193 , ASN A:205 , ASP A:206 , MMA A:501
BINDING SITE FOR RESIDUE CA A 503
06
AC6
SOFTWARE
GLU A:84 , GLU A:165 , ASP A:194 , HOH A:644 , HOH A:698 , HOH A:700
BINDING SITE FOR RESIDUE CA A 504
07
AC7
SOFTWARE
ASP A:194 , SER A:208 , CYS A:209
BINDING SITE FOR RESIDUE CL A 505
08
AC8
SOFTWARE
ASP B:161 , GLU B:165 , ASP B:188 , GLU B:193 , ASP B:194 , CA B:604 , HOH B:623
BINDING SITE FOR RESIDUE CA B 602
09
AC9
SOFTWARE
GLU B:185 , ASN B:187 , GLU B:193 , ASN B:205 , ASP B:206 , MMA B:601
BINDING SITE FOR RESIDUE CA B 603
10
BC1
SOFTWARE
GLU B:165 , ASP B:194 , CA B:602 , HOH B:629 , HOH B:645 , HOH B:666 , HOH B:693
BINDING SITE FOR RESIDUE CA B 604
11
BC2
SOFTWARE
HOH A:736 , HOH A:743 , HOH A:750 , GLU B:93 , HOH B:653
BINDING SITE FOR RESIDUE CA A 606
12
BC3
SOFTWARE
ASP B:194 , SER B:208 , CYS B:209
BINDING SITE FOR RESIDUE CL B 605
13
BC4
SOFTWARE
ASP C:161 , GLU C:165 , ASP C:188 , GLU C:193 , ASP C:194 , HOH C:726
BINDING SITE FOR RESIDUE CA C 702
14
BC5
SOFTWARE
GLU C:185 , ASN C:187 , GLU C:193 , ASN C:205 , ASP C:206 , MMA C:701
BINDING SITE FOR RESIDUE CA C 703
15
BC6
SOFTWARE
GLU C:84 , GLU C:165 , ASP C:194 , HOH C:719 , HOH C:720 , HOH C:744
BINDING SITE FOR RESIDUE CA C 704
16
BC7
SOFTWARE
ASP C:194 , CYS C:209 , HOH C:775
BINDING SITE FOR RESIDUE CL C 705
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_2 (A:106-218,B:106-218,C:106-218)
2: C_TYPE_LECTIN_1 (A:195-217,B:195-217,C:195-217)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_2
PS50041
C-type lectin domain profile.
MBL1_RAT
123-235
3
A:106-218
B:106-218
C:106-218
2
C_TYPE_LECTIN_1
PS00615
C-type lectin domain signature.
MBL1_RAT
212-234
3
A:195-217
B:195-217
C:195-217
[
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]
Exons
(3, 9)
Info
All Exons
Exon 1.3 (A:73-73 | B:73-73 | C:73-73)
Exon 1.4 (A:73-98 | B:73-98 | C:73-98)
Exon 1.5 (A:98-221 | B:98-221 | C:98-221)
View:
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All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000015723
1
ENSRNOE00000411163
chr16:
17591820-17591881
62
MBL1_RAT
-
0
0
-
-
1.2
ENSRNOT00000015723
2
ENSRNOE00000110617
chr16:
17593783-17593943
161
MBL1_RAT
1-51
51
0
-
-
1.3
ENSRNOT00000015723
3
ENSRNOE00000110943
chr16:
17594301-17594417
117
MBL1_RAT
51-90
40
3
A:73-73
B:73-73
C:73-73
1
1
1
1.4
ENSRNOT00000015723
4
ENSRNOE00000111237
chr16:
17596168-17596242
75
MBL1_RAT
90-115
26
3
A:73-98
B:73-98
C:73-98
26
26
26
1.5
ENSRNOT00000015723
5
ENSRNOE00000111555
chr16:
17597083-17597859
777
MBL1_RAT
115-238
124
3
A:98-221
B:98-221
C:98-221
124
124
124
[
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]
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1kwua1 (A:105-221)
1b: SCOP_d1kwub1 (B:105-221)
1c: SCOP_d1kwuc1 (C:105-221)
2a: SCOP_d1kwua2 (A:73-104)
2b: SCOP_d1kwub2 (B:73-104)
2c: SCOP_d1kwuc2 (C:73-104)
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)
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)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
C-type lectin domain
(182)
Protein domain
:
Mannose-binding protein A, C-lectin domain
(39)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(38)
1a
d1kwua1
A:105-221
1b
d1kwub1
B:105-221
1c
d1kwuc1
C:105-221
Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
Triple coiled coil domain of C-type lectins
(54)
Family
:
Triple coiled coil domain of C-type lectins
(54)
Protein domain
:
Mannose-binding protein A
(23)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(22)
2a
d1kwua2
A:73-104
2b
d1kwub2
B:73-104
2c
d1kwuc2
C:73-104
[
close SCOP info
]
CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1kwuA00 (A:73-221)
1b: CATH_1kwuB00 (B:73-221)
1c: CATH_1kwuC00 (C:73-221)
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Topologies
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)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Mannose-Binding Protein A; Chain A
(180)
Homologous Superfamily
:
Mannose-Binding Protein A, subunit A
(180)
Norway rat (Rattus norvegicus)
(32)
1a
1kwuA00
A:73-221
1b
1kwuB00
B:73-221
1c
1kwuC00
C:73-221
[
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]
Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_Lectin_C_1kwuC01 (C:117-219)
1b: PFAM_Lectin_C_1kwuC02 (C:117-219)
1c: PFAM_Lectin_C_1kwuC03 (C:117-219)
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Clans
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)
Clan
:
C_Lectin
(98)
Family
:
Lectin_C
(85)
Rattus norvegicus (Rat)
(33)
1a
Lectin_C-1kwuC01
C:117-219
1b
Lectin_C-1kwuC02
C:117-219
1c
Lectin_C-1kwuC03
C:117-219
[
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